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...atgttttctatagtagaagatagatgtctataatcactcaatgataacagttgcttctgtgcttgccatatggttcactagacatgtgtttgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
species | Zea mays |
transcript | GRMZM2G153704_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148977355|gb|EE026050.2|EE026050
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148996907|gb|EE035711.2|EE035711
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211153701|gb|FL418638.1|FL418638
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATEST: gi|78075828|gb|DV504262.1|DV504262
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACAT
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|78078828|gb|DV507240.1|DV507240
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|113823106|gb|DW940246.1|DW940246
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACEST: gi|211465272|gb|FL339432.1|FL339432
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTA-GCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTAC
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211210064|gb|FL412311.1|FL412311
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGEST: gi|149083192|gb|EE172463.2|EE172463
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148981335|gb|EE027589.2|EE027589
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211349168|gb|FL426325.1|FL426325
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTEST: gi|149082633|gb|EE171834.2|EE171834
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGG-TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACT
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148953947|gb|EC899333.2|EC899333
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGG GGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
genomic: TGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcata ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
aacagttgcttctgtgcttgccatatggttcactagacatgtgtttgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
tgataac putative branch site (score: 2)
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttctatagtagaagatagatgtctataatcactcaatgataacagttgcttctgtgcttgccatatggttcactagacatgtgtttgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGGGGGTTCTTTGGCAGATAAATTTGGGCGGACAAGAACATTCATCCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC