1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatacaaagtctgtaaaaacaagaatcccgaaacatgaaatgcatcgtgtctgaaaatgacccaaatatatttttactaattttcatgacctgtcctagGCATCATCAAGACAGGCGAGCGCTTGGTGCCGGTGCTCTTAAAGGCCATCCAAGAGGTTATCAAGGAGAAAGTTGAGCAGTCGTAATGATGAACAGAAAT
species | Zea mays |
transcript | GRMZM2G152757_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|211300451|gb|FL250325.1|FL250325
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|211300451|gb|FL250325.1|FL250325
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|211300451|gb|FL250325.1|FL250325
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|211300451|gb|FL250325.1|FL250325
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|211300451|gb|FL250325.1|FL250325
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG TEST: gi|6760483|gb|AW324642.1|AW324642
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctag-
EST: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAG GCATCATCAAGACAGGCGAGCGCTTGGTGCCGGTGCTCCTAAAGGCCATCC
genomic: TGTAGTGGTCGACAAAAAAGTAGTTGCAAAATTTTCGTACTGGCAAACAGgtgtgcatca ... cctgtcctagGCATCATCAAGACAGGCGAGCGCTTGGTGCCGGTGCTCTTAAAGGCCATCC
tcgtgtctgaaaatgacccaaatatatttttactaattttcatgacctgtcctagGCATCATCAAGACAGGCGAGCGCTTGGTGCCGGTGCTCTTAAAGGCCATCCAAGAGGTTATCAAGGAGAAAGTTGAGCAGTCGTAATGATGAACAGAAAT
tactaat putative branch site (score: 44)
cctgtcct putative PPT
aaatatatttttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatacaaagtctgtaaaaacaagaatcccgaaacatgaaatgcatcgtgtctgaaaatgacccaaatatatttttactaattttcatgacctgtcctagGCATCATCAAGACAGGCGAGCGCTTGGTGCCGGTGCTCTTAAAGGCCATCCAAGAGGTTATCAAGGAGAAAGTTGAGCAGTCGTAATGATGAACAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
gcataca
- - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - -acatgaa
- - - - - - - - - - - - - - - - - - - - atgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatg