Sequence
atgc intronic sequence ATGC exonic sequence...ctacagttctaacacatgatttcccccccattcgtagtttatttttgtttaggatttttctggccttcaagtaccttagaagtttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G151905_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 3'ss of exon 8
ctacagttctaacacatgatttcccccccattcgtagtttatttttgttta-ggatttttctggccttcaagtaccttagaagtttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
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ctgcgagtggagtatgtc-tcccttgtagctatgcattatgttctcatttttggattttgtttgccttcttagactctgaaagtttccaattcttgtccagATATTTCATTTACACAGCAAAAGATTTGGAAGAATGGTCAGAGAATCCTGAATCATTTCATCATGAGCAGAATTTGGTACAATGGACTGAGAAACAACGC
upper sequence: GRMZM2G151905_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G19490.1 (Glycine max), 3'ss of exon 8
ctacagttctaacacatgatttcccccccattcgtagtttatttttgtttaggatttt--tctggccttcaagtaccttagaagt-ttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
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---ttattcaactatatgattgtaatttgctttgagacttagtgatatttctccttatgattatgcactctattaccagactaatgtctttatctttcaacagGTATTTTGTTCTGACAGCAAGTGATTTGGAAGAGTGGTATCGTAACCCTGAGTCTTTTCACCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTGAGG
upper sequence: GRMZM2G151905_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G18530.1 (Glycine max), 3'ss of exon 7
ctacagttctaacacatgatttcccccccattcgtagtttatttttgtttaggatttt--tctggccttcaagtaccttagaagt-ttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
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---ttattcaactatatgattgtaatttgctttgagacttagtgatatttctccttatgattatgcactctattaccagactaatgcctttatctttcaacagGTATTTTGTTCTGACAGCAAGTGATTTGGAAGAGTGGTATCGTAACCCTGAGTCTTTTCACCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTGAGG
upper sequence: GRMZM2G151905_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv08s0217g00060.t01 (Vitis vinifera), 3'ss of exon 7
-------ctacagttctaaca-catgatttcccccccattcgtagtttatttttgtttaggatttttctggccttcaagtaccttagaagtttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
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gttgtgagagcgcctttaacagtattatgtccctct-acttttggttcctggtttttgaaaattaattt---ttgctagggc----aatgctattgatatttcaacagGTATTTTGTTTTATCAGCAAGTGATTTGGAGGAGTGGTACCAGAATCCTGAGTCTTTTCATCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttaggatttttctggccttcaagtaccttagaagtttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
ttatttt CT-rich tract
tttgcaattatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctacagttctaacacatgatttcccccccattcgtagtttatttttgtttaggatttttctggccttcaagtaccttagaagtttgcaattattttgtagGTACTTCATTTTCACAGCAAAGGATTTGGAAGAGTGGTCAGAGAATCCTGAGTCCTTCCACCATGAGCAGAATTTGGTTCAGTGGACCGAGAAAAAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - catgatt
- - - - - - - - - - - -cccccca
- - - - - - - - - - - - - - - - - - - - - ttttgtt