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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgattcataatcttactctgtcccattattatgtctccaatatactatcacacattatcattttagcagttatcactttaacacaactttgtcactaaaataatgttgaatctttgttgtttcagTTTTTTGTAGGAGCTGTCTCATCAATATTCCTACTAGTAGCTGCTCCTAAGTTTGGTCTCGATGGCATATGGGCTGGTCTTACTCTGTTCATGAGTTTGC

Basic information

species Zea mays
transcript GRMZM2G150557_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150557_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 3'ss of exon 10
gttctgattcataatcttactctgtcccattattatgtctccaatatactatcacacattatcattttagcagttatcactttaacacaactttgtcactaaaataatgttgaatctttgttgtttcagTTTTTTGTAGGAGCTGTCTCATCAATATTCCTACTAGTAGCTGCTCCTAAGTTTGGTCTCGATGGCATATGGGCTGGTCTTACTCTGTTCATGAGTTTGC
                        ||  |||  |||   |   || | | ||   | | |      ||| |||||||  ||  | ||   | |  ||||   | || | ||     ||| ||||||||||| ||||  |||||| ||||||||  | | || || || || ||||||||||||||||| | |||| | |||||||| |||||||| || ||||||||||
----------------------gttcagatttctattcttatcatgtcccattgtatagt------ttatcagttatagctgcagcat--cctaatcac---attagtatt-----tttcttgtttcagTTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcactttaacacaactttgtcactaaaataatgttgaatctttgttgtttcagTTTTTTGTAGGAGCTGTCTCATCAATATTCCTACTAGTAGCTGCTCCTAAGTTTGGTCTCGATGGCATATGGGCTGGTCTTACTCTGTTCATGAGTTTGC
                      cactaaa  putative branch site (score: 2)
                                        tctttgtt  putative PPT
                         taaaataatgttgaat  TA-rich tract