1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatactactgtgaaatctagtgacgttttacctttatcttctagttgtccagcattccagccacaaattagctatatagttcacaactgaatttgattgtgaatttatttctttgcttattttttctcctggcataaatggtgttaaattgcccattcattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATTTTAAACTGGATCAGAGGATAGTCAATTCCTACACAAGATATGGGGAGG
species | Zea mays |
transcript | GRMZM2G150496_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAG ACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATEST: gi|149012761|gb|EE042650.2|EE042650
genomic: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAGgtatactact ... cattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAG ACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATEST: gi|9028554|gb|BE238549.1|BE238549
genomic: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAGgtatactact ... cattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAG ACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATEST: gi|4681192|gb|AI629862.1|AI629862
genomic: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAGgtatactact ... cattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAG ACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTAT
genomic: AGTATGATTCAGTGTTTCTTGAATCAGCGAAGCGAACCTATGAGTACAAGgtatactact ... cattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTAT
ttgcttattttttctcctggcataaatggtgttaaattgcccattcattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATTTTAAACTGGATCAGAGGATAGTCAATTCCTACACAAGATATGGGGAGG
ttcatttt CT-rich tract
tattttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactactgtgaaatctagtgacgttttacctttatcttctagttgtccagcattccagccacaaattagctatatagttcacaactgaatttgattgtgaatttatttctttgcttattttttctcctggcataaatggtgttaaattgcccattcattttgcagACATATTTCGTTGATCTGGATGTGAAACCTCTGGACAAGATGGTACATTATTTTAAACTGGATCAGAGGATAGTCAATTCCTACACAAGATATGGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT