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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcctaatggacatattcatgtagttttcctagtttatatttttcttggatctgatgtatacatggcacaattcttgttgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCAAGCACCAGCATTGCTCCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC

Basic information

species Zea mays
transcript GRMZM2G150484_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150484_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g50480.1 (Oryza sativa), 3'ss of exon 8
------tttgcctaatggacatattcatgtagttttcctagtttatatttttcttggatctgatgtatacatggcacaattcttgttgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCAAGCAC------CAGCATTGCTCCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC
      |||  ||  || |  | |  || ||  ||| ||   |||  ||| | ||||||    |   |   |  ||   ||||||| ||||    |  ||| ||||| ||  ||||||| || || | ||||||||||||||| ||||||||||||||||||      |||||||||| | || ||||||||||||||||||||        
ttgaggtttatcttgtg-atttgtgaatata--ttttctgccttaattttcttttggattgtttacctgtgtatcattgttcttgtggtgt---cggctcttgcagATTGTGAATCCAGGTGCTTCATCCAACCCTCAATTGAATCAATCTCAGCCAAGCACCAGCACCAGCATTGCTTCTGGTCCTCCACTCCCTCAGCATCTCA------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774884|gb|DR972762.1|DR972762
EST:     CAACGTCATCATCCATGAGCAGTGCAACTGTTTCTACGCAGCCCCAAGAG                         AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCA
genomic: CAACGTCATCATCCATGAGCAGTGCAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCA
EST: gi|31356324|gb|CD440681.1|CD440681
EST:     CAACGTCATCATCCATGAGCAGTGCAACTGTTTCTACGCAGCCCCAAGAG                         AATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCA
genomic: CAACGTCATCATCCATGAGCAGTGCAACTGTTTCTACGCAGCCCCAAGAGgtatgaacat ... attctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggatctgatgtatacatggcacaattcttgttgtgtgtttgattctcgcagAATGCCAATCCAGTTGGTTTACCCAACCCTCAATTGACTCAATCTCAGCCAAGCACCAGCATTGCTCCAGGGCCTCCACTCCCTCAGCATCTTCTTCATC
                                              ttctcgc  CT-rich tract
           atgtata  TA-rich tract