1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtctgtatcatacggtgtaccttttttctgaacccatattgcctgtttgttcatccgctggcccattttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGCGGGAGCTTCAAGTTGCTACTGATACTTTTAGTAACAAGCACATTTTAGG
species | Zea mays |
transcript | GRMZM2G150024_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCAATG-GGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTG CTGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGCEST: gi|19351342|gb|BM895874.1|BM895874
genomic: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTGgtctgtatca ... tttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGC
EST: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTG CTGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGCEST: gi|20512844|gb|BQ280038.1|BQ280038
genomic: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTGgtctgtatca ... tttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGC
EST: TGCAATGTGGCGCCGGCGCAAACCTGAAGAGCATTCCTTCGATGTTCCTG CCGAGGAGGATCCAGAAGTEST: gi|87156676|gb|DY401465.1|DY401465
genomic: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTGgtctgtatca ... tttgcttcagCCGAGGAGGATCCAGAAGT
EST: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTG CCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGC
genomic: TGCAATGTGGCGCCGTCGTAAACCTGAAGAGCATTTCTTCGATGTTCCTGgtctgtatca ... tttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGC
ttttttctgaacccatattgcctgtttgttcatccgctggcccattttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGCGGGAGCTTCAAGTTGCTACTGATACTTTTAGTAACAAGCACATTTTAGG
ttttgcttc CT-rich tract
atatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatcatacggtgtaccttttttctgaacccatattgcctgtttgttcatccgctggcccattttgcttcagCCGAGGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAAAAGTTTTCGTTGCGGGAGCTTCAAGTTGCTACTGATACTTTTAGTAACAAGCACATTTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT