1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtaccttgcctgaggcttaaaagctaacacatgctagtccagttttgatgtgtaccagcctctttctacatactgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTAGATTGGATGCCCAGCAGAAGAAGCTTAACCTCCCCATCCTTCCCACCA
species | Zea mays |
transcript | GRMZM2G149751_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTEST: gi|32847674|gb|CD987355.1|CD987355
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
EST: CCTCGAGGAAATCCTCAGCCCGTGTGGCCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGACCGCCGCCGTGGGACCAACGTTAGTGCTEST: gi|211106464|gb|FL269547.1|FL269547
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
EST: CTCGAGGATATCCTCACCCCGTGTGACCAAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAAGGCTCTGACCACCGCCGTGCGACCAACTTTAGTGCCEST: gi|211107371|gb|FL269554.1|FL269554
genomic: CTCGAGGAAATCCTCACCCCGTGTGACCAA-TGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGC-
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGAACACCGCCGTGCGACCAACGTEST: gi|211107368|gb|FL269551.1|FL269551
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGT
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTEST: gi|32833047|gb|CD972725.1|CD972725
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTEST: gi|211107370|gb|FL269553.1|FL269553
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTC-AGAAGGCT GCTGCTGCTCTCAAGG-CTCTGACCACCGCCGTGGGACCAACGTTAGTGCTEST: gi|32845718|gb|CD985399.1|CD985399
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
EST: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCT GCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
genomic: CCTCGAGGAAATCCTCACCCCGTGTGACCAATGAAGAAGTCCAGAAGGCTgtaagtacct ... actgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCT
acacatgctagtccagttttgatgtgtaccagcctctttctacatactgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTAGATTGGATGCCCAGCAGAAGAAGCTTAACCTCCCCATCCTTCCCACCA
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccttgcctgaggcttaaaagctaacacatgctagtccagttttgatgtgtaccagcctctttctacatactgttacagGCTGCTGCTCTCAAGGGCTCTGACCACCGCCGTGGGACCAACGTTAGTGCTAGATTGGATGCCCAGCAGAAGAAGCTTAACCTCCCCATCCTTCCCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC