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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaactgaaaagcggggtgttgattctgttatacatcacattcatcagaattgagatccttatcattgataccttttaacattctgctaaattcttttagGTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGGGAGAGTCATGCACGACGTATGAATGGGAACCTGGAATGTGTGTGTGAGG

Basic information

species Zea mays
transcript GRMZM2G149576_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13237072|gb|BG355086.1|BG355086
EST:     ATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG                         GTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGG
genomic: ATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAGgtaatgaaaa ... attcttttagGTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGG
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     ATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAG                         GTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGG
genomic: ATAATTCAAAATCATGCAGCTCTTTCTACTGGGTGATAAACGTTCTACAGgtaatgaaaa ... attcttttagGTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaattgagatccttatcattgataccttttaacattctgctaaattcttttagGTTCCAGTTGCGGTAAGTGTGTTCTTGTGGGAGGCCATGCAGTTATGTAGGGAGAGTCATGCACGACGTATGAATGGGAACCTGGAATGTGTGTGTGAGG
                                       tgctaaa  putative branch site (score: 2)
                                              ttctttt  CT-rich tract
                                          taaattctttta  TA-rich tract