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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttgtcatttcttgcacatgcttaataataccgctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATG

Basic information

species Zea mays
transcript GRMZM2G149238_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
--------gtcagttgtcatttcttgcacatgcttaataataccg-ctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATG
         |   || | ||| |   |     |  |||  |   | ||   ||  |   | |||   |  ||||||  |||||| ||  ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||
gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgttttcat-ttccattttt--tagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG

upper sequence: GRMZM2G149238_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA03G04500.1 (Glycine max), 3'ss of exon 8
--gtcagttgtcatttcttgcacatgcttaataataccgctgtttgcttcactttttccttcatttcatactccatt--gtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATG
     | || |  ||   |   |     ||||  | || |  |||  ||   |   |   |   |   |  || |||   |||  |||||||||| ||||| ||||||||||| |||||||| |||||||||||  | |||||  | |||   || |||||
gtaaaaattttgcttatatttccccttgtaatt-tccctccatttttttggttcactgaatttatctgttttcaattccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataataccgctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATG
 gcttaat  putative branch site (score: 4)
                                        ctccatt  putative PPT
                                atttcata  TA-rich tract