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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggacaacctgcctctctgttacgatgaacaagtttgtacttagttcttactgggatctggatcaaatagtgtcaactgctttctcatgttagtaacacagtgttttctcgcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG

Basic information

species Zea mays
transcript GRMZM2G147882_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g09300.2 (Oryza sativa), 3'ss of exon 8
gtaggacaacctgcctctctgt-tacgatgaacaagtttgtacttagttcttactggg---atctggatcaaatagtgtc-------aactgctttctcatgttagtaacacagtgttttct-cgcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
|| || ||| |   | ||      | | |        |  |  ||  |  |||   |    |||| | |   || || |        ||||| |        ||| ||  | |  | | ||| |  || ||||||||||||||||||||||||||| ||||||| ||||||||  | || 
gttggccaaaccatcccttaaagcatgttctttggagtcattgtttttctttaggagaaccatcttggtgtcattgttttttttactaactgttactgttctttattataatacggctgtctgcatacctgtagGTCAACCTTACATCGAGTGGTCTTAGATGGACGAGAACGTCATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077655|gb|DV506089.1|DV506089
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32924156|gb|CF028968.1|CF028968
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|211415426|gb|FL477512.1|FL477512
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32924444|gb|CF029256.1|CF029256
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|211525267|gb|FL432922.1|FL432922
EST:     CTTGGCGACATGCTCGAAAGGTGGAGGTAACGGCGTTTTCAG                         GTCCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: CTTGGCGACATGCTCGAAAGGTGGA-GTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGT-CAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923806|gb|CF028618.1|CF028618
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32924110|gb|CF028922.1|CF028922
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|71299018|gb|DR785501.1|DR785501
EST:     TTCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923874|gb|CF028686.1|CF028686
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32924334|gb|CF029146.1|CF029146
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923638|gb|CF028450.1|CF028450
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|76287314|gb|DV026882.1|DV026882
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|71429425|gb|DR810475.1|DR810475
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32858735|gb|CD998416.1|CD998416
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923912|gb|CF028724.1|CF028724
EST:     ATCGCCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923869|gb|CF028681.1|CF028681
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32923708|gb|CF028520.1|CF028520
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|32924079|gb|CF028891.1|CF028891
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
EST: gi|74241069|gb|DT648983.1|DT648983
EST:     ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAG                         GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
genomic: ATCGTCAACCTTGGCGACATGCTCGAAAGGTGGAGTAACGGCGTTTTCAGgtaggacaac ... gcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagtgtcaactgctttctcatgttagtaacacagtgttttctcgcacgtgtagGTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG
                         tagtaac  putative branch site (score: 1)
                                      ttttctcgc  putative PPT
                        ttagtaa  TA-rich tract