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gttaggtgtttgcaactgtctttctactgcatagaataagtgttactgttgggtcgattgcaatcaaggccctgttttcttgagcttcatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTCTTGAACACGCTGATGAGAAGCAAAAGAACATTCTGTTT
species | Zea mays |
transcript | GRMZM2G147721_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|60355786|gb|DN222759.1|DN222759
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|148995918|gb|EE035161.2|EE035161
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|148972760|gb|EE023733.2|EE023733
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|6194630|gb|AW146734.1|AW146734
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAEST: gi|211433629|gb|FL480968.1|FL480968
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACA
EST: GATGATTATTTAGATTGTTTCGGTGATCCTAAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|211420061|gb|FL460750.1|FL460750
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: AATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|148943252|gb|EC888313.2|EC888313
genomic: AATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTEST: gi|111189546|gb|EE287682.1|EE287682
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
EST: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
genomic: GATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAGgttaggtgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCT
aatcaaggccctgttttcttgagcttcatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTCTTGAACACGCTGATGAGAAGCAAAAGAACATTCTGTTT
tttattctt CT-rich tract
agtatttattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggtgtttgcaactgtctttctactgcatagaataagtgttactgttgggtcgattgcaatcaaggccctgttttcttgagcttcatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAGTGTTCCTGGCTAGTCGTGCAAGCTCTTGAACACGCTGATGAGAAGCAAAAGAACATTCTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC