Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattattcttaaactaatggcatacaggtgcattttagctgcagcttcaataatttattggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG

Basic information

species Zea mays
transcript GRMZM2G147671_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
gtatgtattattcttaaactaatggcatacaggtgcattt-tagctgcagcttcaataatttatt--ggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
||| |||||  | |  ||| |||| ||| |   |  ||   ||  | ||      || | | | |   ||  ||||      | ||||   |||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG

upper sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 8
gtatgtattattcttaaactaatggcatacaggtgcattttagctgcagc--ttcaataatttattggccctttttatgtgtaaaata------------acagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
    ||||   | | || | | |    |     ||   ||||  || |    |  ||| ||| |       || |||  || | ||||             ||||||||||| ||||| || ||||| |||||||| |||||||||||||| ||  |||| |  |||   |||
----gtatgtctataaatccagtaaattttccatgttctttaaatgtattaatagaatgattgacaatatgttcttaactgaataatattcattgcttctgcagCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

upper sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 8
gtatgtattattcttaaactaatggcatacaggtgcattttagctgca--gcttcaataatttattggccctttttatgtgtaaaata------------acagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
    ||||   | | || | | |         |||   ||||  || |  | |  ||| ||| |       || |    || | ||||             ||||||||||| ||||| || |||||||||||||| |||||||||||||| || ||||| |  |||   |||
----gtatgtctataaatccagtaaatgttccgtgttctttaaatgtattgatagaatgattgacaatatgttctgcactgaataatattcgttgcttctgcagCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG

upper sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------------------------------------------------gtatgtattattcttaaactaatggcat-acaggtgcattttagctgcagcttcaataatttattggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
                                                                        |   |  |      |  |      || |||| ||    |  ||||||| |   ||    |      | ||||    | |       |||||||| || ||||| ||||||||||| || || ||||||||||| |||||  |||| |   ||  ||||
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtg----cagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5325058|gb|AI783249.1|AI783249
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|89252647|gb|DY624433.1|DY624433
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|24767864|gb|CA403000.1|CA403000
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|9730888|gb|BE509640.1|BE509640
EST:     TGAGTAAGGTGTTTGAAGACAGAACCTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60336789|gb|DN203762.1|DN203762
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60401369|gb|DN234176.1|DN234176
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|211047090|gb|FL234542.1|FL234542
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|15053742|gb|BI359287.1|BI359287
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|211047091|gb|FL234543.1|FL234543
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|32937218|gb|CF042037.1|CF042037
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|15053743|gb|BI359288.1|BI359288
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|32937848|gb|CF042667.1|CF042667
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCCCCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60359212|gb|DN226185.1|DN226185
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|4388150|gb|AI491322.1|AI491322
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|22542686|gb|BU093124.1|BU093124
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|28984428|gb|BQ539033.2|BQ539033
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|9733091|gb|BE511843.1|BE511843
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCN
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATC-
EST: gi|76910327|gb|DV163809.1|DV163809
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|5846870|gb|AI999953.1|AI999953
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60400076|gb|DN232883.1|DN232883
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|211525286|gb|FK977009.1|FK977009
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|37384426|gb|CF629283.1|CF629283
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|78021348|gb|DV489735.1|DV489735
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|211132437|gb|FL443441.1|FL443441
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGYCAYCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|33095782|gb|CF055776.1|CF055776
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60352219|gb|DN219192.1|DN219192
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|5770174|gb|AI973348.1|AI973348
EST:     ATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: ATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|37382952|gb|CF628448.1|CF628448
EST:     GAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: GAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|67030433|gb|CO459182.1|CO459182
EST:     TGAGTAAGGTGTTTGNAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGGGNTNNGATCC-A-TGATCCATCTGTTA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTT--GATCCCAATGATCCATCTGTTA
EST: gi|60395593|gb|DN228463.1|DN228463
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|5124319|gb|AI746055.1|AI746055
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|15053278|gb|BI358823.1|BI358823
EST:     AAGACAGAACG-TTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: AAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|9733092|gb|BE511844.1|BE511844
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|60354976|gb|DN221949.1|DN221949
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|78026924|gb|DV495311.1|DV495311
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|4609687|gb|AI600526.1|AI600526
EST:     TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
EST: gi|4804535|gb|AI665407.2|AI665407
EST:     TGAGTAAGGTGTTTGAAGACAGAACATTTGTGTCATCTATCCTTAATTCG                         CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA
genomic: TGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 638

CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 489

CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 585

CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 491

CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtatta ... aaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttagctgcagcttcaataatttattggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG
                                  tttttatgtgtaaaat  TA-rich tract