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gtgatatgcctgtgaatcttcttgaatgttaggtcttaatactatattgttttgtttttggatcttatttggttactgaacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATTATTACAAAATGATT
species | Zea mays |
transcript | GRMZM2G147500_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGARATAATGAACTTGTTACAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATEST: gi|76923168|gb|DV169366.1|DV169366
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATEST: gi|60347145|gb|DN214118.1|DN214118
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATEST: gi|24765838|gb|CA400997.1|CA400997
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTGCAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATEST: gi|87156724|gb|DY401513.1|DY401513
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTGCAG AAAGAAGGACGACAACGCGGAACATGGAATGGEST: gi|67015293|gb|CO444042.1|CO444042
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGG
EST: ATCCCGTTCTGGAATGGAGATAATCAACTTGTTGCAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATEST: gi|149081286|gb|EE170399.2|EE170399
genomic: ATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
EST: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAG AAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
genomic: AGAAAAAGGAATCATCCCGTTCTGGAATGGAGATAATGAACTTGTTACAGgtgatatgcc ... aacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGAT
tcttaatactatattgttttgtttttggatcttatttggttactgaacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATTATTACAAAATGATT
tcttaat putative branch site (score: 3)
atactatattgttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatgcctgtgaatcttcttgaatgttaggtcttaatactatattgttttgtttttggatcttatttggttactgaacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATTATTACAAAATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC