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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtattgacactatttcctacatgtccaacatgaatattgtacatgatattcacttcatttcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACATCATATGGATGCAAAATAACAGTTGTTCCAGCAAATTGGCCTGCTTCAG

Basic information

species Zea mays
transcript GRMZM2G147450_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147450_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 3'ss of exon 8
------gtcagtattgacactatttcct-----acatgtccaacatgaatattgtacatga-tattcacttcatttcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACATCATATGGATGCAAAATAACAGTTGTTCCAGCAAATTGGCCTGCTTCAG
      ||  || | | | || | || |     | |      | |||||| |  ||  | |  |||  |||| |||  |||  ||||||| || || || ||||| ||||| || |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |
gtcagtgttggtttggtccctttctcttttttgaaacacttcagatgaatctcatatctaaacattagcttccttttattt--agGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGTCATATGGATGCAAGATAACTGTTGTTCCAGCCAATTGGCCTGCTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22472307|gb|BU036787.1|BU036787
EST:     CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT                         GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATTGGCA
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: gi|26457213|gb|CA828796.1|CA828796
EST:     CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT                         GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATTGGCA
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: gi|20301382|gb|BQ164325.1|BQ164325
EST:     CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT                         GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATCGGCA
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: gi|21760053|gb|BQ635594.1|BQ635594
EST:     AGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT                         GCTGGTTGCCTATGCACTTTGGTATCAAGCATAATATTTTGAGACGATTGG
genomic: AGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagG-TGGTTGCCTATG-ACTTTGGTATCAAACATAATATTTTGAGACGATTGA
EST: gi|116818541|gb|EC861576.1|EC861576
EST:     AGAGGGATCAGTC-AGTGAAACTTTTCAT                         GTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACG
genomic: AGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctacatgtccaacatgaatattgtacatgatattcacttcatttcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACATCATATGGATGCAAAATAACAGTTGTTCCAGCAAATTGGCCTGCTTCAG
                                  ttcacttcatttcttt  CT-rich tract
               atgaatatt  TA-rich tract