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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggtttctgttcacctgcacattcagttcgtgtagcatttcttcttgtttccatgtaccagccgtcgattgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTACTCGCTTTGCGAATG

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76930345|gb|DV172346.1|DV172346
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|78113279|gb|DV531671.1|DV531671
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|91054335|gb|EB164753.1|EB164753
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|23199550|gb|BU582115.1|BU582115
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|22472587|gb|BU037067.1|BU037067
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|26560002|gb|CA832237.1|CA832237
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|22935898|gb|BU572173.1|BU572173
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71431665|gb|DR812715.1|DR812715
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|78108215|gb|DV526633.1|DV526633
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|149055656|gb|EE156361.2|EE156361
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|78075209|gb|DV503643.1|DV503643
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71442889|gb|DR823939.1|DR823939
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGANACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|78088431|gb|DV516824.1|DV516824
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71428787|gb|DR809837.1|DR809837
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCCATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|26559550|gb|CA831785.1|CA831785
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71443418|gb|DR824468.1|DR824468
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71443280|gb|DR824330.1|DR824330
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|71318127|gb|DR795825.1|DR795825
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|148940241|gb|EC885013.2|EC885013
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|91875282|gb|EB405239.1|EB405239
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|74238712|gb|DT646626.1|DT646626
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCCGCC-AATCTTCT
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCC-GCCCAATCTTCT
EST: gi|76011884|gb|DT939054.1|DT939054
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|149009677|gb|EE041609.2|EE041609
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|78110547|gb|DV528957.1|DV528957
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|148973153|gb|EE024223.2|EE024223
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|149013904|gb|EE043402.2|EE043402
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|89763957|gb|DY690934.1|DY690934
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGANACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
EST: gi|50334852|gb|CO529978.1|CO529978
EST:     TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAG                         GTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA
genomic: TACCTGAAGTATGACAACTGCTACAGAGACGGCACGCCTGAAACCGTGAGgtgcggtttc ... tgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcgtgtagcatttcttcttgtttccatgtaccagccgtcgattgtgatgcagGTTTGGGCGCATGTCCCGAGCGCTGGTGAACTCTGGCCGCCCAATCTTCTACTCGCTTTGCGAATG
            atttctt  TA-rich tract