ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...actagtttgtagtgtgtgaaacatttgttcataaagtcaactgaaggcatcgccgtatttaaacttaaccattctgacgtctatttttcattctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCCTAGTGTTTTGACTTTCAATGCACCTGGATGCTTGTCGTACTGAATGCTG

Basic information

species	Zea mays
transcript	GRMZM2G146206_T04
intron #	8
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g62420.2 (Oryza sativa), 3'ss of exon 4

actagtttgtagtgtgtgaaacatttgttcataaagtcaactgaaggcatcgccgtatttaaactta---accattctgacgtctatttttcattctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCCTAGTGTTTTGACTTTCAATGCACCTGGATGCTTGTCGTACTGAATGCTG--------
  |||  ||     | |   |  ||   ||   |  |   |  |   |||  | |  ||||   ||    |   | |||| |  || ||||  || | | ||||||||||| |||||||||||||||||||| || |||||||||||   ||| ||||||| ||  || |||     |  |||| | || | | | |||||||        
--tagcatgccaaatatttgaatttaactctatacattctcacataacatttcaggctttaccgttgtgtatattactgatgattacttttt-ttttctgcagCCTGAATTTGTGGACATCATCAAGTCTGCTACCGTCAAGTCTTC---TGCTTAGTGTTCTGGGTTGCAA-----CCAGATGATCGTAGGAGTTAATGCTGCCAATTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|16919933|gb|BM074427.1|BM074427

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|150037302|gb|DY843516.1|DY843516

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|33101583|gb|CF061543.1|CF061543

EST:     CAGCTCAACCAGATGTTGATGGACTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32936387|gb|CF041206.1|CF041206

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCACCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|14243822|gb|BG841520.2|BG841520

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|67021888|gb|CO450637.1|CO450637

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTG-AGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGGTCA-GTCTTCATCTGC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTG-TCAAGTCTTCATCTGC

EST: gi|24767602|gb|CA402746.1|CA402746

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|149005098|gb|EE039627.2|EE039627

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTTTGCCACTGTCAAGTTTTCATTTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|24769561|gb|CA404690.1|CA404690

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|149097485|gb|EE183357.2|EE183357

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|71330644|gb|DR802095.1|DR802095

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|16927318|gb|BM080387.1|BM080387

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|149105683|gb|EE291241.2|EE291241

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|149095398|gb|EE181040.2|EE181040

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32850309|gb|CD989990.1|CD989990

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|5791027|gb|AI977819.1|AI977819

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|101388915|gb|EB816439.1|EB816439

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTTTGCCACTGTCAAGTTTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|31352539|gb|CD436896.1|CD436896

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|149005099|gb|EE039628.2|EE039628

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32931721|gb|CF036533.1|CF036533

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|6012502|gb|AW061939.1|AW061939

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|110517584|gb|EE022171.1|EE022171

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|71757929|gb|DR955866.1|DR955866

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|211412106|gb|FL450398.1|FL450398

EST:     CAGTTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|148995363|gb|EE034577.2|EE034577

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|9743048|gb|BE519196.1|BE519196

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|33094011|gb|CF054005.1|CF054005

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32909130|gb|CF013942.1|CF013942

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32930797|gb|CF035609.1|CF035609

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|67017127|gb|CO445876.1|CO445876

EST:     AGCTCAACCAGATGTTGATGGATTCCCTTGT-GGTGGAGCCTCATTGAA-                         CCTGNATTCGTGGACATCATCA
genomic: AGCTCAACCAGATGTTGATGGATTCC-TTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCA

EST: gi|211291624|gb|FL459848.1|FL459848

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|32941523|gb|CF046342.1|CF046342

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|31360263|gb|CD444620.1|CD444620

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|148995362|gb|EE034576.2|EE034576

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTTTGCCACTGTCAAGTTTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|83278303|gb|DV942311.1|DV942311

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|31354853|gb|CD439210.1|CD439210

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTTGTCA-GTCTTCATCTGC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACT-GTCAAGTCTTCATCTGC

EST: gi|16927255|gb|BM080324.1|BM080324

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|18178250|gb|BM379460.1|BM379460

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|67015285|gb|CO444034.1|CO444034

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|33093246|gb|CF053240.1|CF053240

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|211297519|gb|FL438922.1|FL438922

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|31628067|gb|CD526427.1|CD526427

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

EST: gi|110960987|gb|EE181039.1|EE181039

EST:     CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAG                         CCGGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCTTCTGCC
genomic: CAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 38

GGTCTGTAAATGGAGCTAACTGCAAAGAACTTGCAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctt ... ttctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCCTAGTGTTTTGACTTTCAATGCACCTGGATGCTTGTCGTACTGAATGCTG

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 108

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 71

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 277

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ggcatcgccgtatttaaacttaaccattctgacgtctatttttcattctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCCTAGTGTTTTGACTTTCAATGCACCTGGATGCTTGTCGTACTGAATGCTG

                          ttctgac  putative branch site (score: 277)
                                  tctatttttcattct  CT-rich tract
                                    tatttttcattctata  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actagtttgtagtgtgtgaaacatttgttcataaagtcaactgaaggcatcgccgtatttaaacttaaccattctgacgtctatttttcattctatacagCCTGAATTCGTGGACATCATCAAGTCTGCCACTGTCAAGTCTTCATCTGCCTAGTGTTTTGACTTTCAATGCACCTGGATGCTTGTCGTACTGAATGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG