1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcaaaggcgacactcctacggggggtcaatttctagagctcaaattagcttggttgtgtgtattgcgactcagatggtttgtgcatatttctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAATCCAGCATTTATAACCCAACTACTTCCCCTAGTGTTATAGCATCTGCA
species | Zea mays |
transcript | GRMZM2G144730_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTCATGGAAA GTACCCACTAAAGGCAGTCAAGGTGATGCACANCTGTGGCCCTCAGAACAGEST: gi|71764041|gb|DR961978.1|DR961978
genomic: TGCTCATGGAAAgtaaggttca ... ctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACA-CTGTGGCCCTCAGAACAG
EST: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAA GTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAEST: gi|7238117|gb|AW573339.1|AW573339
genomic: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGA
EST: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAA GTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAEST: gi|60400196|gb|DN233003.1|DN233003
genomic: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGA
EST: ATCATGTTATCTGGTGAAACTGCTCATGGAAA GTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAEST: gi|148958743|gb|EC905020.2|EC905020
genomic: ATCATGTTATCTGGTGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGA
EST: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAA GTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGA
genomic: AGGGAAGGTGCTGATGCCATCATGTTATCTGGTGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGA
tagcttggttgtgtgtattgcgactcagatggtttgtgcatatttctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAATCCAGCATTTATAACCCAACTACTTCCCCTAGTGTTATAGCATCTGCA
tatttct CT-rich tract
atatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaggcgacactcctacggggggtcaatttctagagctcaaattagcttggttgtgtgtattgcgactcagatggtttgtgcatatttctgtgtttagGTACCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCCCTCAGAACAGAATCCAGCATTTATAACCCAACTACTTCCCCTAGTGTTATAGCATCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata