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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattatcgttttctatcgatcaacatccagagtatgtgactttttttagtgatgaagaaaccgttcccattccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAAAGTTGGAAATGAACCCTGCTCGGATCGTGGGGATGTCTCTCTCTGTAA

Basic information

species Zea mays
transcript GRMZM2G144716_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144716_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g52720.1 (Oryza sativa), 3'ss of exon 7
gtaaattatcgttttctatcgatcaacatccagagtatgtgactttttttagtgatgaagaaaccgttcccattccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAAAGTTGGAAATGAACCCTGCTCGGATCGTGGGGATGTCTCTCTCTGTAA
             |  | || ||    |     |  || ||    |||||  ||||     | |  ||  | || | | |||||||||||||||   ||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||  | ||||| |||||||| || ||||
------------gtaatttcaattcgaagttgaaagatatgg---tttttgatgatacgacagcacttgtcctttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCAAAGATGGAAATGAACCCTGCTCGTGTTGTGGGAATGTCTCTATCCGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71299962|gb|DR786036.1|DR786036
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|89248889|gb|DY620675.1|DY620675
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|149100664|gb|EE186752.2|EE186752
EST:     GCAGGCTTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GCAGGC-TTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|71429695|gb|DR810745.1|DR810745
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|78179752|gb|DV550125.1|DV550125
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGGAATGTGATCCAGGGC
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGG-C
EST: gi|78081290|gb|DV509702.1|DV509702
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|78081291|gb|DV509703.1|DV509703
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|60340500|gb|DN207473.1|DN207473
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|76917524|gb|DV166879.1|DV166879
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|37379589|gb|CF626540.1|CF626540
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|71429835|gb|DR810885.1|DR810885
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|148953564|gb|EC898916.2|EC898916
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|148957873|gb|EC904027.2|EC904027
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: gi|211417239|gb|FL450863.1|FL450863
EST:     GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTAAAG                         ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccagagtatgtgactttttttagtgatgaagaaaccgttcccattccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAAAGTTGGAAATGAACCCTGCTCGGATCGTGGGGATGTCTCTCTCTGTAA
                                       ttcccattcc  CT-rich tract
              acttttttta  TA-rich tract