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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG

Basic information

species Zea mays
transcript GRMZM2G144372_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 8
atgttaatatatttcactggcacaaccttg---ttatttatggtgaaattaa--tatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
 ||||    | | |   | ||     |||    | |||  | ||||| ||    | |  ||||  |||| ||   |  |||   ||   ||  | |||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
ttgttgggttttgtggtttgctttttctttgattcattcctcgtgaacttgtgttttcatggtg-ctcagttg--taattgcttacataaa--actattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATTCTTAGATATGGTCTTCCCCCATCATTCCTG

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 8
atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaat-tattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
|| ||| ||   ||   || |   |  ||  || || |       || ||        |  |    ||  |   |      |    | |||| ||    |||| ||||||||||||||||||||||||||||||||| | ||||  ||||||||||| |||||||||||||| ||||| ||| ||
at-ttactagcatttgttgaccttaattttatacttttctcaccttttatcactcaacacttattcttgctcactactttttactttatattttttcaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTG

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 8
---atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctc-aatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
   ||||||| |  ||       | |     || |     || |   || |||   |||     ||  |||| ||  || |  |||    || || |  || |||| ||||| |||||||||||||||||||| |||||||| |||   ||||||||||| ||||||||||| || ||||| ||| ||
aaaatgttaacaagttctgtgatctc--ttctgcttgccctgttatcataaatgctgtgactcttctgatttgttattttt--acttctttttttttcctgaagGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTG

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 8
------atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
      |||| ||||  ||       | |     || |     || |    | |||   |||     ||   ||  |  || |    |    || ||    || |||| ||||| |||||||||||||||||||| |||||||| |||   ||||||||||| ||||||||||| || ||||| ||| ||
cataaaatgtgaataagttctgtgatctc--ttgtgcttgccctgttatcgtaaatgctgtgactcttctgatttgttattttttctt----ttttttccctgaagGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTG

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 8
---atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
    |  |    | |||  |   ||| || |  |  | | | || |   ||| ||| |    ||   |||   |  || | | || ||  |||| ||    |||| ||||||||||||||||||||||||||||||||| | ||||  ||||||||||| |||||||||||||| ||||| ||| ||
acttttctcgcgtttttatcactcaccacatattcttgtcttgttatcctaaaatgctatggtccttattcactacttttta-cttta--tatttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTG

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 8
atgttaatatatttcactggcac--aaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaatta---ttattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
    || | | || |  |  | |  || || ||| | ||   |    ||| |    | || ||| ||   |||||||    ||| ||| |    ||  || |||||| ||||| ||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||  |||| ||||| ||| | 
--actactcttttcccttttctctcaagctggttctcta-atttttgttagtgcacttgtttcttaaa--cttggtttgtgactctaaatgcattttctgagcagGTCTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTCTGAGATATGGATTGCCACCATCTTTCTTA

upper sequence: GRMZM2G144372_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 8
atgttaata---tatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
 ||| |||    | | |   ||  | |   | | ||||  | ||    ||   ||| |    | |     | ||  || |  |   | | | || |  | ||||| ||||| ||||||||||| ||||||||||| ||||||||||  ||||| || |||||||||||  |||| ||||| ||| ||
-tgtgaatgacttgtgttgttgatagagtgtggctatt-gttgtttccttccaatgttaaattttggtaattttatttttatatcatgagt-ttctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396077|gb|DN228946.1|DN228946
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|32790927|gb|CD943163.1|CD943163
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGGTATGCCAGCTACAGCGAG                         GGATGCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|16377910|gb|BI992182.1|BI992182
EST:     CACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: CACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|116823457|gb|EC867003.1|EC867003
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|60394318|gb|DN227188.1|DN227188
EST:     GGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: GGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|37387887|gb|CF631146.1|CF631146
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|40336015|gb|CK370085.1|CK370085
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|89248670|gb|DY620456.1|DY620456
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|76012957|gb|DT940127.1|DT940127
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|71428527|gb|DR809577.1|DR809577
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|40335990|gb|CK370060.1|CK370060
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|61117885|gb|DN558846.1|DN558846
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|61117886|gb|DN558847.1|DN558847
EST:     AGCTATGAGGACCACTCTTCTTCAGTGGTGTTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTTGGTGCTGTGCGTGTCTTTTGTGGAG
genomic: AGCTATGAGGACCACTCTTCTTCAGTGGTGTT-ATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTT-G-TGCTGTGCGTGTCTTT-GTGGAG
EST: gi|31558493|gb|CD527705.1|CD527705
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTTGTGGAGAG
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTT-GTGGAGAG
EST: gi|61117883|gb|DN558844.1|DN558844
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|37397212|gb|CF635901.1|CF635901
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|211430939|gb|FL367561.1|FL367561
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|32910803|gb|CF015615.1|CF015615
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|71430058|gb|DR811108.1|DR811108
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|21843146|gb|BQ703727.1|BQ703727
EST:     CAGCTACAG-GAG                         GTATTCAGTTCCTGGATGCACTTTTGTG-TGTGCGTGTCTTTGTGGAGAGC
genomic: CAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|67010828|gb|CO439577.1|CO439577
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|31358589|gb|CD442946.1|CD442946
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|20811126|gb|BQ295604.1|BQ295604
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|67022208|gb|CO450957.1|CO450957
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|37390080|gb|CF632266.1|CF632266
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|60342510|gb|DN209483.1|DN209483
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
EST: gi|61117882|gb|DN558843.1|DN558843
EST:     AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC
genomic: AAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 121

AGCACAGGAAAGCCGGATGCAGGAGATGGAGAAGCTACTGCGAGACCAAGAAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 113

AGCACAGGAAAGCCGGATGCAGGAGATGGAGAAGCTACTGCGAGACCAAGAAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 101

AGCACAGGAAAGCCGGATGCAGGAGATGGAGAAGCTACTGCGAGACCAAGAAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 90

AGCACAGGAAAGCCGGATGCAGGAGATGGAGAAGCTACTGCGAGACCAAGAAGCTATGAGGACCACTCTTCTTCAGTGGTGTTATGCCAGCTACAGCGAGgtacttgtct ... tattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG
 aattaat  putative branch site (score: 90)
                                 aactgtaattattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgttaatatatttcactggcacaaccttgttatttatggtgaaattaatatggtggtatctcaatttcttggttgtgaactgtaattattattgtgcagGTATTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTGTCTTTGTGGAGAGCATTCTTAGATATGGTCTGCCGCCATCATTCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - ttcactg
- - - - - - - - - - cacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg