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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGACAGGTTCTATTCCACGAAATTGTAGAAAATTTCATGTTTTGCTCTGAT

Basic information

species Zea mays
transcript GRMZM2G144254_T04
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352118|gb|DN219091.1|DN219091
EST:     GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG                         CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: gi|78022546|gb|DV490933.1|DV490933
EST:     GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG                         CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGACAGGTTCTATTCCACGAAATTGTAGAAAATTTCATGTTTTGCTCTGAT
                            ttttgac  putative branch site (score: 3)
                        aagatttt  TA-rich tract