1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcattggctttctttctggatctgattccaccattgatctgtcacaaatctgcctctcacctgatcttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGTCCGTGCTTGCCATGCCTATGGTCTCATCAAGAACAACCGGCTTCAGAG
species | Zea mays |
transcript | GRMZM2G144254_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCACAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACCCAATAAGCGCTTCGEST: gi|88756206|gb|DY540347.1|DY540347
genomic: AAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|88756245|gb|DY540386.1|DY540386
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|6056875|gb|AW091280.1|AW091280
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|37378198|gb|CF625769.1|CF625769
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|40334752|gb|CK368822.1|CK368822
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: CACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|211072305|gb|FL431317.1|FL431317
genomic: CACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|19770035|gb|BQ034756.1|BQ034756
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAGAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGEST: gi|211072306|gb|FL431318.1|FL431318
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
EST: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAG TCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
genomic: TTGTCACTTCTGTAAAAGCAAAAGCAAAACGTGTACTGTTGAAGGCAAAGgtcattggct ... ttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCG
ctgattccaccattgatctgtcacaaatctgcctctcacctgatcttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGTCCGTGCTTGCCATGCCTATGGTCTCATCAAGAACAACCGGCTTCAGAG
tcttgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattggctttctttctggatctgattccaccattgatctgtcacaaatctgcctctcacctgatcttgtttgcagTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGGACACAATAAGCGCTTCGTCCGTGCTTGCCATGCCTATGGTCTCATCAAGAACAACCGGCTTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC