1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctccgaatcaacttatatttgggattggcggggtgggattacatcgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTCGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|71764241|gb|DR962178.1|DR962178
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|32936801|gb|CF041620.1|CF041620
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTCGGGAAATGGEST: gi|19272554|gb|BM888810.1|BM888810
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|22489727|gb|BU049650.1|BU049650
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|19822693|gb|BQ048717.1|BQ048717
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGEST: gi|19351385|gb|BM895917.1|BM895917
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
EST: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAG TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
genomic: GAGGTGGTGCTGGTGGTGGACCACTTGATTTTCTTAGAAACAATCCACAGgttctcattt ... tattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
cgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
ttatttt CT-rich tract
ttctaattatgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctccgaatcaacttatatttgggattggcggggtgggattacatcgatttaacctcactgttctaattatgaattaatagcttatcaattattttgcagTTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG
- - - aatcaac