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gttttgtattctttgttttggcttacattctatggcttcttatgtagcacctgcctgaactttttgctggtaccatgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTGAGGAGAATCATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAG
species | Zea mays |
transcript | GRMZM2G143462_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG CCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTEST: gi|71764240|gb|DR962177.1|DR962177
genomic: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGgttttgtatt ... catgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATT
EST: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG CCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTEST: gi|9731839|gb|BE510591.1|BE510591
genomic: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGgttttgtatt ... catgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATT
EST: TTTCAAGCAGTTCGGGAAATGGTCCATACAAATCCACAAATTTTGCAG CCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTEST: gi|71771538|gb|DR969475.1|DR969475
genomic: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGgttttgtatt ... catgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATT
EST: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAG CCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATT
genomic: TTTCAAGCAGTTAGGGAAATGGTCCATACAAATCCACAAATTTTGCAGgttttgtatt ... catgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATT
tctatggcttcttatgtagcacctgcctgaactttttgctggtaccatgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTGAGGAGAATCATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAG
aacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtattctttgttttggcttacattctatggcttcttatgtagcacctgcctgaactttttgctggtaccatgttatagCCTATGCTCGTTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTGAGGAGAATCATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG