Sequence
atgc intronic sequence ATGC exonic sequence...tagttattattattaccatgatgtacatcagtagtattacaggtcatctgatacctctgcgatgatgtaactggtcactgttttgatctattgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G143356_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g55940.1 (Oryza sativa), 3'ss of exon 7
tagttattattattaccatgatgtacatcagtagtattacaggtcatctga-tacctctgcgatgatgta--actggtcactgttttgatctat------tgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
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---------ctctggccatgttatacattgtttgtcttacaggtcacctgagtacctctgcatgggtatactattgatcactgctttgctctttgctatttgctatcagGGGGCATCTGATTCACTGAACCTACCCGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGAAACGCTGCTGAACATGCTAGTGCAATAATGTTTG
upper sequence: GRMZM2G143356_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA15G00380.2 (Glycine max), 3'ss of exon 6
-----------------------------------tagttattattatt-----accatgatgtacatcagtagtattacaggtc--atctgatacctctgcg--atgatgtaactggtcactgttttgatctattgttgtc----agGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
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gtatagctatatcattttcagaatttcttgatcattaatttctattattgtacaactaaagcttctaatattcctattcttgttcttgtccataaacactgcgtcataagttcattcatagacatattgtgtttctggtctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTG
upper sequence: GRMZM2G143356_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA13G44960.1 (Glycine max), 3'ss of exon 6
tagttattattattaccatgatgtacatcagtagtattacaggtcatctgatacctctgcg--atgatgtaactggtcactgttttgatct--attgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
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---tcatcaaaactctgtattcatacattcacaatattccta-ttatccataaattctgcatcataagttcattcattgacattgtgtttctggtctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTG
upper sequence: GRMZM2G143356_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 3'ss of exon 7
tagttattattattaccat-gatgtacatcagtagtattacaggtcatctgatacct--ctgcgatgatgtaactggtcactgttttgatctattgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
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--tttattatgctttccttcaacattaatttat-gttctggaggtagaaaggctattggttgtgaacagttgacaaatcaatttttttctggtttcttttcagGGAGCATCTGAGTCATTAAACATGCCAGTGGCTTTTATTAGTGTCATTCTGCTTCCAATTGTAGGAAATGCTGCTGAGCATGCCAGTGCAATTATGTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211410157|gb|FL246131.1|FL246131EST: TAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
genomic: TAACATTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctgatacctctgcgatgatgtaactggtcactgttttgatctattgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
ttttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagttattattattaccatgatgtacatcagtagtattacaggtcatctgatacctctgcgatgatgtaactggtcactgttttgatctattgttgtcagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGCTTCCTATTGTGGGCAATGCAGCTGAACATGCAAGCGCAATAATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA