1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaattcacctgtttccgtctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTGAGCACGAGTACTTCAAGGACCTTGAGATGGTACAGTGACCTGCTAAAT
species | Zea mays |
transcript | GRMZM2G143213_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTEST: gi|18171982|gb|BM347370.1|BM347370
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: GAACCTGCTGGCTTGGACCTTCTCTCT AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTEST: gi|18163570|gb|BM333409.1|BM333409
genomic: GAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|91051178|gb|EB161596.1|EB161596
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT AAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTCEST: gi|18166704|gb|BM336543.1|BM336543
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|17929629|gb|BM266589.1|BM266589
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60397283|gb|DN230099.1|DN230099
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|12968998|gb|BG265943.1|BG265943
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|5525594|gb|AI861487.1|AI861487
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|5819371|gb|AI987577.1|AI987577
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|21809566|gb|BQ667884.1|BQ667884
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|78074515|gb|DV502949.1|DV502949
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|18162372|gb|BM332211.1|BM332211
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|110194217|gb|EC876115.1|EC876115
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|37384260|gb|CF629190.1|CF629190
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAATAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|18650116|gb|BM498935.1|BM498935
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: TGGCAACAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTGT AAAATGCTTCGGTATGAGCCAAGCAAAAGAATCACAGCTCGGCAAGCACTTEST: gi|31910663|gb|CD651537.1|CD651537
genomic: TGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTT
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|67024512|gb|CO453261.1|CO453261
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|18167215|gb|BM337054.1|BM337054
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|78025082|gb|DV493469.1|DV493469
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60398759|gb|DN231575.1|DN231575
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|5847313|gb|AW000392.1|AW000392
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|211268426|gb|FL478582.1|FL478582
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60394332|gb|DN227202.1|DN227202
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|4967063|gb|AI692029.1|AI692029
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|27575994|gb|CA998688.1|CA998688
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60394730|gb|DN227600.1|DN227600
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|32916297|gb|CF021109.1|CF021109
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|31909621|gb|CD651010.1|CD651010
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|78093070|gb|DV521444.1|DV521444
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60398446|gb|DN231262.1|DN231262
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAATAATAGTCCCAAATCTTGAACCTGCTGGCTTGGACCTTCTCTCTEST: gi|60344999|gb|DN211972.1|DN211972
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
EST: GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCT
genomic: CCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaa ... ctgctgacagA
ctgcatcatatatatcctctctgtattgaattcacctgtttccgtctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTGAGCACGAGTACTTCAAGGACCTTGAGATGGTACAGTGACCTGCTAAAT
tttccgtct CT-rich tract
tcatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaattcacctgtttccgtctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTGAGCACGAGTACTTCAAGGACCTTGAGATGGTACAGTGACCTGCTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG