1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagccactatgcgtgcactatataactcaaaagctagcaaaccatgtcgagataacttaattattgtataaatacaccatcattttttaaaattttgaggtggaatcggtttaaattttcttctatatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAACAGAGGTTAAAAAACCTCAAGGATGAGGATGCGACAGTTCAGTCACCT
species | Zea mays |
transcript | GRMZM2G142502_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAG GCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAEST: gi|89106855|gb|DY577072.1|DY577072
genomic: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAGgttagccact ... tatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAG GCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAEST: gi|22521311|gb|BU080122.1|BU080122
genomic: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAGgttagccact ... tatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAG GCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAEST: gi|89106854|gb|DY577071.1|DY577071
genomic: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAGgttagccact ... tatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAG GCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAEST: gi|22520755|gb|BU079566.1|BU079566
genomic: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAGgttagccact ... tatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
EST: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAG GCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
genomic: TTAAGATGCCAGAAGTTGCTGGAGGATGAAGAGGAAGCTGCTCAGAAAAGgttagccact ... tatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGA
cattttttaaaattttgaggtggaatcggtttaaattttcttctatatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAACAGAGGTTAAAAAACCTCAAGGATGAGGATGCGACAGTTCAGTCACCT
ttttcttctatatctt CT-rich tract
tttaaattttcttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccactatgcgtgcactatataactcaaaagctagcaaaccatgtcgagataacttaattattgtataaatacaccatcattttttaaaattttgaggtggaatcggtttaaattttcttctatatcttgaagGCAAGCCGAACTGATGGAAAGGAAGCGGATGAAGAAACTTAGGCAGAAAGAACAGAGGTTAAAAAACCTCAAGGATGAGGATGCGACAGTTCAGTCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG