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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgcagctgctaaaccaatgattttccagtttccttctgttaccattgtccttttcagaagttatcaatcatataatggaattgcctgcacttttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCAGCTGACGTGAAATACATCGATCCAACTTACATGGTTCGTGCATGCCGTGCCAACGCATCTGATGCAA

Basic information

species Zea mays
transcript GRMZM2G139360_T06
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139360_T06 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 11
atttgcagctgctaaaccaatgattttccagtttccttctgttaccattgtccttttcagaagttatcaatcata------taatgga----attgcctgcacttttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCAGCTGACGTGAAATACATCGATCCAACTTACATGGTTCGTGCATGCCGTGCCAACGCATCTGATGCAA
          | | |||| | |  || || | ||   |||  | |||   | |||||| | | || |||||||||      |||| ||    ||    | || ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| || || |||||||| ||||| |||||||| |||||||||||||
-------atagttgaacccaaggcttccctgcttttgtct--tcccacgtttcttttctgta-ttgtcaatcataccatcataatagataacatcagttacaattttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCTGCTGATGTAAAATACATTGATCCGACATATATGGTTCGGGCATGTCGTGCCAATGCATCTGATGCAA

upper sequence: GRMZM2G139360_T06 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 12
-----atttgcagctgctaaaccaatgattttccagtttccttctgttaccattgtccttttcagaagttatcaatcata-taatggaattgcctgcacttttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCAGCTGACGTGAAATACATCGATCCAACTTACATGGTTCGTGCATGCCGTGCCAACGCATCTGATGCAA
     | |  || ||   ||  ||    || |    ||| ||||  ||  | |     || |   |  || |  || ||| | ||||  |  |      |   ||||| ||||  ||||| | |   ||||| ||||||||||| || |||||||| ||||| ||||| ||| |||| || || || || || |||||||||||  
gttatagtctcatcttacaaggcagcacttgt---attttcttccattctcttccatattcttgcattttcttgatgatagtgatgggctcacacttcttcaacagATCAAGAAACATTTTAGGAGGATTGGCGTTCCAGCTGATGTTAAATACATTGATCCCACTTATATGATTCGAGCGTGTCGAGCAAATGCATCTGATGCTG

upper sequence: GRMZM2G139360_T06 (Zea mays), 3'ss of exon 8
lower sequence: PP1S114_31V6.1 (Physcomitrella patens), 3'ss of exon 11
------atttgcagctgctaaaccaatgattttccagtttccttctgttaccattgtccttttcagaagttatcaatcatataatggaattgcctgcacttttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCAGCTGACGTGAAATACATCGATCCAACTTACATGGTTCGTGCATGCCGTGCCAACGCATCTGATGCAA
      ||||     ||||  ||    |||  || | |  |    |   |    |     |||   | | | ||    |  | |   || ||  | |   |  ||| | ||||  ||||||||||||||||| || ||||| || ||||| ||||| ||||| || |||||| |||| ||||| || ||||| || |||||   ||
cgagtgatttaggattgctgtactc-cgatgctc-aatggcaaatttcgaaagcttcgaattttgaacgatttcggggacctta---aaatgtgt-cgtatcgcagGTAAAGAGACATTTCAAGGACATTGGAGTACCAGCGGATGTGAAGTACATTGATCCTACCTACATGATTCGAGCATGTCGAGCCAATGCTTCTGACCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtccttttcagaagttatcaatcatataatggaattgcctgcacttttcagATTAAGATGCATTTCAAGGACATTGGTGTTCCAGCTGACGTGAAATACATCGATCCAACTTACATGGTTCGTGCATGCCGTGCCAACGCATCTGATGCAA
                                             cacttttc  CT-rich tract
                  ttatcaatcatataat  TA-rich tract