1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcattatgtactcttcgcttggttatagctagttatttataccactcaagagctgagagtttgtggaactcactacggttgttgtatgacacatctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTTCAAAAGTGTTTTACTAGTGAACCATGGTG
species | Zea mays |
transcript | GRMZM2G139038_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCCTTTTGCTTTTATCAGGAAATCAATGACATTAATACAACTTAGAAG CTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTTEST: gi|67013661|gb|CO442410.1|CO442410
genomic: AAGCCTTTTGCTTTTATCAGGAAATCAATGACATTAATACAACTTAGAAGgtaatatatc ... acatctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTT
EST: AGCCTTTTGCTTTTATTCAGGAAATCAATGACATTAATACAACTTAGAAG CTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTT
genomic: AGCCTTTTGCTTTTA-TCAGGAAATCAATGACATTAATACAACTTAGAAGgtaatatatc ... acatctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTT
tcaagagctgagagtttgtggaactcactacggttgttgtatgacacatctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTTCAAAAGTGTTTTACTAGTGAACCATGGTG
aactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattatgtactcttcgcttggttatagctagttatttataccactcaagagctgagagtttgtggaactcactacggttgttgtatgacacatctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAAGTGACAATTTGTGGAGGGCCTTCAAAAGTGTTTTACTAGTGAACCATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG