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gtaagaaatatataaaaaggaccatatatatcataagttctatttgttttttttggcaatttattaaatgttccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGCAAGAGCCCTTATGGATACGCGGCATCTGAGTCTCCGAAGCTGAATGGT
species | Zea mays |
transcript | GRMZM2G138410_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAA AGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGEST: gi|149104100|gb|EE289533.2|EE289533
genomic: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAAgtaagaaata ... ccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAG
EST: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAA AGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGEST: gi|6952532|gb|AW424600.1|AW424600
genomic: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAAgtaagaaata ... ccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAG
EST: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAA AGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGEST: gi|211093969|gb|FL454793.1|FL454793
genomic: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAAgtaagaaata ... ccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAG
EST: GAGATTCTCTTTTCATCSCCGGCAAAAGCAGAGAGAGAGCTCCMCTGGAA AGCGAAATWTGGCATCACAGAAATKTGCGGAGACCTKTGGAACTGGGCTAG
genomic: GAGATTCTCTTTTCATCGCCGGCAAAAGCAGAGAGAGAGCTCCACTGGAAgtaagaaata ... ccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAG
atatcataagttctatttgttttttttggcaatttattaaatgttccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGCAAGAGCCCTTATGGATACGCGGCATCTGAGTCTCCGAAGCTGAATGGT
tgttccttctcc CT-rich tract
tatttgttttttttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaatatataaaaaggaccatatatatcataagttctatttgttttttttggcaatttattaaatgttccttctccagAGCGAAATATGGCATCACAGAAATGTGCGGAGACCTGTGGAACTGGGCTAGCAAGAGCCCTTATGGATACGCGGCATCTGAGTCTCCGAAGCTGAATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA