Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaatttggtgtcatcgttatgaaaagttgtttgagctattgattaatgattattttttctggtgacctttctatgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA

Basic information

species Zea mays
transcript GRMZM2G138125_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138125_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g59624.2 (Oryza sativa), 3'ss of exon 8
gtttgaatttggtgtcatcgttatgaaaagttgtttgagctattgattaatgattatttt--ttctggtgacctt----tctatgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA
||    ||    |  ||  | |   |||   || ||  | ||||| ||||     || ||  |  | ||    ||    | | || ||||||||| || |||||||||||||||| || ||||| || ||||||| | || ||||       |  ||||| ||||| |||||||| 
gtacagatcattttccactgatgcaaaactctggttttgttattggttaactgccatcttaatattagtccttttttattttttggatgcagAGGCAATTATATGAAGCTTTTCTTAACAGTGAACTAGTTCATTCATCAATGCAA------GGGTCACCCTTGGCCGCAATCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211389135|gb|FL355235.1|FL355235
EST:     TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAG                         AGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
genomic: TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAGgtttgaattt ... atgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
EST: gi|67035224|gb|CO463757.1|CO463757
EST:     TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAG                         AGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
genomic: TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAGgtttgaattt ... atgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
EST: gi|211102981|gb|FL307628.1|FL307628
EST:     TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAG                         AGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
genomic: TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAGgtttgaattt ... atgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
EST: gi|32931646|gb|CF036458.1|CF036458
EST:     TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAG                         AGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG
genomic: TAGCCAAGAAGAATGAGCTAATTGTCTGGCTGAAGTTAACACCATGCCAGgtttgaattt ... atgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgagctattgattaatgattattttttctggtgacctttctatgcatgcagAGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA
             gattaat  putative branch site (score: 3)
                                      cctttctat  putative PPT
         tattgattaatgatta  TA-rich tract