1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcattagcatgcttgctcggtctccataaaactggtcagttgtcgtagcaaattagctattgcctctctgtttacactgggcatcgccatccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGGAAGGTGATGCTGCCAAGTTCTTTCAACTTCTCTCCTCAAAAAACATTT
species | Zea mays |
transcript | GRMZM2G137968_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|78119202|gb|DV537586.1|DV537586
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCACTTGAATGTTTTGCTTCTTTGCGGAAGGCCTGTATTATTGAACAG GAACCCCAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|71442228|gb|DR823278.1|DR823278
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|29544272|gb|CB604652.1|CB604652
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCCCTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|71766539|gb|DR964476.1|DR964476
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|31909355|gb|CD650877.1|CD650877
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGEST: gi|71762207|gb|DR960144.1|DR960144
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: AAGCACTTGAATGTTTTGCTTTTTTGCGGAAGGCCTGTATTATTGAACAG GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
tagcaaattagctattgcctctctgtttacactgggcatcgccatccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGGAAGGTGATGCTGCCAAGTTCTTTCAACTTCTCTCCTCAAAAAACATTT
aatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattagcatgcttgctcggtctccataaaactggtcagttgtcgtagcaaattagctattgcctctctgtttacactgggcatcgccatccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAGGAAGGTGATGCTGCCAAGTTCTTTCAACTTCTCTCCTCAAAAAACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - -tgcttgc
- - - - - - - - - - - -ccataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcatc