1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcctctttacctcgtgccatttttttaatcttctacataccgtgtacttgtgtaccagtctcaccctcagtcctcagatattgatccacgcaaaatagatttgattccttgctgtttcacatggaccctttgtgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATGGCCTCATCACACGTTTGAGGGAGGAAATCGTAGCCTTCAAATGATTTT
species | Zea mays |
transcript | GRMZM2G137615_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTCAACTACATTCTTGTCGTA-GCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGANEST: gi|32911351|gb|CF016163.1|CF016163
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATEST: gi|5791229|gb|AI978021.1|AI978021
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATEST: gi|60337159|gb|DN204132.1|DN204132
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATEST: gi|211513903|gb|FL285080.1|FL285080
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATEST: gi|30052636|gb|AI065926.2|AI065926
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCCGGCCEST: gi|71770369|gb|DR968306.1|DR968306
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCC
EST: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATEST: gi|9794315|gb|BE552623.1|BE552623
genomic: AATTCAACTACATTCTTGTCGTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
EST: GTAGGCGCACAGGAGGCCGAGACTGGAAAT GTCTGCG-TAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCG-TGAT
genomic: GTAGGCGCACAGGAGGCCGAGACTGGAAATgtaagtcctc ... tgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGAT
acgcaaaatagatttgattccttgctgtttcacatggaccctttgtgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATGGCCTCATCACACGTTTGAGGGAGGAAATCGTAGCCTTCAAATGATTTT
atttgat putative branch site (score: 113)
ccctttgt putative PPT
aaatagatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctctttacctcgtgccatttttttaatcttctacataccgtgtacttgtgtaccagtctcaccctcagtcctcagatattgatccacgcaaaatagatttgattccttgctgtttcacatggaccctttgtgtactgcagGTCTGCGTTAGGGTAAGAGATAATGCCGACCTGGCCACAATGAGCGTTGATGGCCTCATCACACGTTTGAGGGAGGAAATCGTAGCCTTCAAATGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA