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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

Basic information

species Zea mays
transcript GRMZM2G137528_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
gtttgtta-aatccac-ttcatctgatgaactgtttgctgcc-tctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
 ||    | |||   | |  ||     | ||| |     | | |  |   |  | |||||| | || | |  | |   || || || | |||     | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||
-ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaacttta---ttcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G00420.1 (Glycine max), 3'ss of exon 8
gtttgttaaatccacttcatctgatga-actgtttgctgcctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
|    |  |   || ||  | ||   |   ||||  ||   |    | |  |  |  | |  |  |  |  |||| | ||  ||| |   |||  | | ||||| || || || || ||||||||||||||| |  | ||| | ||||| ||||| || |||||||| || |||||||| ||||| ||||||||||| || |
gcaaatgcagagcaatttgtttgtcaatgttgttaacttaatgcaatatttaagtattttatagcctgaccaacgctcaaattttgtgccttg--tatgcagGCTGTTTGCACTGAAGCTGGAATGTTTGCTTTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCCGTGGCGAAGGTGATGAAAAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 8
gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttga---ttcgaagtaacgtttaacatttt--ttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
   |  |||  | | | ||       |  ||||||     | |    | ||| |  | || |   ||  |      |   |||  |    |||| || || | ||||| || || || || ||||||||||||||  |  | ||| | ||||| ||||| || |||||||| || |||||||| ||||||||||||||||| || |
---tactaatgcaaatgca--gagcaatttgtttgtcaa-tgttaacttaatgtgttattaagtattttatagcctgaccaacgctcaaattttgtgcctttgcagGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgttaaatccacttcatctgatgaactgtttgctgcctctc-gtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggct-----gttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                        | || ||||| ||   ||||   ||| |||||||  |   |  |  |  | | |  | || | ||||||| |     | |||||| || || || ||||| |||||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||
-----------------------gtaaagtgttttctatttctctacttctatcttgttctctctacattttgcctctctc-ttatgtttttggttaatacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 8
gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttgattcgaagtaacgtttaac--attttttttttggctgtt--cagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
      ||| |||   |  |       |     ||| | |  |  | |   |  | |  | |    ||| |  || ||||  |  |||| | |   ||||  ||||| || || ||||| |||||||||||||||||  | ||||| || || || || ||||| || || || |||||||||||||| ||||||||||| || |
----actaagtccttattcttcatcatatcaagtgcggtcggttatctgttttgtcttctaacatcaagca-tgtctaactaaacttttatataattgtttgcagGCGGTATGCACAGAAGCTGGAATGTTTGCTCTAAGGGAGAGGAGAGTACATGTGACACAAGAAGATTTTGAGATGGCAGTGGCAAAGGTGATGAAAAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 8
gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttgattcgaagtaac----gtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
  |   |       ||||||  | |      | |  ||     | |||    ||||  | |||  ||     |     || | |||||    ||| | | | ||||| || || ||||| || || ||||||||| |  | ||||| ||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||||| |
-ctgactttcctgccttcataggtttttgaatataatggaaaccattta---cttgcatagatctgatacctctcggattgagcatttgaacttttgtt-tgcagGCGGTATGCACAGAAGCAGGGATGTTTGCTTTGAGGGAGAGGAGGGTTCACGTAACACAGGAAGATTTCGAGATGGCTGTAGCCAAAGTGATGAAGAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S7016_1V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------gtttgttaaatccacttcatctgatgaactgtttgctgcctctcg---tttcaatcttgtgttgattcgaagtaacgtt---------taacattttttttttggct-gttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                 || | |    |  | |||   |  |||   |   |  ||  || |    ||   | || ||||  ||  || |   | |         ||  | |||||| |||  |   |||||| || || ||||||||||| ||||||||||| |||||  |  | || || || ||||| ||||||||||||||||| ||||| |||||||||||||| |
gtagctacaaacctacagtatctagggtttatttctggtagtgatacgaaggaagctgctagaggcttttgtattatgttatttaaaattttggctgttcgtttatactaattttttattgcttcaatcagGCTGTATGCACAGAGGCTGGCATGTTTGCTCTACGTGAACGGCGTGTACATGTGACACAAGAGGACTTCGAGATGGCTGTGGCTAAGGTGATGAAGAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ28638 (Selaginella moellendorffii), 3'ss of exon 7
gtttgttaaatccacttcatctgatgaactgtttgctgc-ctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                              |||||     ||| || || | |      ||||  ||| | |  || |    |||||||||| ||| | ||||| || || || |||||||||||||||||||| || |||||  | || || || || ||||| || ||||| ||||| |||||||| ||||||||||| |
------------------------------gtttgtgatgctcgcgctttagttggtccttga--cgacggagtgtgtt-tttttttttttttgctctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGATTTCGACATGGCGGTGGCCAAAGTGATGAAGAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 6
gtttgttaaatccacttcatctgatgaactgtttgctgc-ctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                              |||||     ||| || || | |      ||||  ||| | |  || |    |||||||||| ||| | ||||| || || || |||||||||||||||||||| || |||||  | || || || || ||||| |||||||| ||| | |||||||| ||||||||||| |
------------------------------gtttgtgatgctcgcgctttagttggtccttga--cgacggagtgtgtt-tttttttttttttgctctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGACTTCGACATGCCGGTGGCCAAAGTGATGAAGAAGG

upper sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 7
gtttgttaaatccacttcatctgatgaactgtttgctgc-ctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                              |||||     ||| || || | |      ||||  ||| | |  || |    |||||||||| ||| | ||||| || || || |||||||||||||||||||| || |||||  | || || || || ||||| |||||||| ||||| |||||||| ||||||||||| |
------------------------------gtttgtgatgctcgcgctttagttggtccttga--cgacggagtgtgtt-tttttttttttttgctctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGACTTCGACATGGCGGTGGCCAAAGTGATGAAGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211436662|gb|FL284171.1|FL284171
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACA
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACA
EST: gi|37393602|gb|CF634067.1|CF634067
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|5108208|gb|AI739921.1|AI739921
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434063|gb|FL284156.1|FL284156
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAA
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAA
EST: gi|7216253|gb|AW562375.1|AW562375
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCCC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|5268967|gb|AI770931.1|AI770931
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434072|gb|FL284165.1|FL284165
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTT
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTT
EST: gi|60341929|gb|DN208902.1|DN208902
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|213167947|gb|FM194936.1|FM194936
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436664|gb|FL284173.1|FL284173
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGA
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGA
EST: gi|211436658|gb|FL284167.1|FL284167
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTT
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTT
EST: gi|113683757|gb|DW835323.1|DW835323
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCC
EST: gi|32867237|gb|CF006919.1|CF006919
EST:     GATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: GATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|86468970|gb|DY235340.1|DY235340
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTTTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434071|gb|FL284164.1|FL284164
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436667|gb|FL284176.1|FL284176
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436671|gb|FL284180.1|FL284180
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|6654125|gb|AW267530.1|AW267530
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|20300608|gb|BQ163551.1|BQ163551
EST:     TG-AAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32944271|gb|CF049090.1|CF049090
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTAC
EST: gi|32936020|gb|CF040832.1|CF040832
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|67024358|gb|CO453107.1|CO453107
EST:     TGAAAAAGATCGCANAAAAGATGAATGGGGCCTCANGAGCTGAGCTCAAG                         GCCGTCTGTACAGA
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGA
EST: gi|211434065|gb|FL284158.1|FL284158
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTG
EST: gi|211436659|gb|FL284168.1|FL284168
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATG
EST: gi|211436668|gb|FL284177.1|FL284177
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGGAATGTTTGCTCTCCGTGAGAGAAGGG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGG-AATGTTTGCTCTCCGTGAGAGAAGGG
EST: gi|7216576|gb|AW562698.1|AW562698
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGCGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436663|gb|FL284172.1|FL284172
EST:     TGAAAAAGATCGCANAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGNCTGTACAGAGGCTGGAATGTTTG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTG
EST: gi|211434068|gb|FL284161.1|FL284161
EST:     TGAAAAAGATCGCANAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATG
EST: gi|6021527|gb|AW066455.1|AW066455
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGT
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGT
EST: gi|86471403|gb|DY237773.1|DY237773
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|18177572|gb|BM378782.1|BM378782
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434067|gb|FL284160.1|FL284160
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|19058484|gb|BM737151.1|BM737151
EST:     ATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: ATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|4776454|gb|AI665457.1|AI665457
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32797085|gb|CD949321.1|CD949321
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|37383142|gb|CF628557.1|CF628557
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|60352642|gb|DN219615.1|DN219615
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211431472|gb|FL284151.1|FL284151
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|60350071|gb|DN217044.1|DN217044
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|29544841|gb|CB605449.1|CB605449
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436665|gb|FL284174.1|FL284174
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|21391089|gb|BQ529138.1|BQ529138
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436669|gb|FL284178.1|FL284178
EST:     GAAAAAGATCGCAGAAAAGATGAATGGGGCCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGNAATGTTTGCTCTCCGTGAGA
genomic: GAAAAAGATCGCAGAAAAGATGAATGGGGCC-TCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGG-AATGTTTGCTCTCCGTGAGA
EST: gi|211431471|gb|FL284150.1|FL284150
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|6865378|gb|AW360728.1|AW360728
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|15053472|gb|BI359017.1|BI359017
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|60353200|gb|DN220173.1|DN220173
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211431470|gb|FL284149.1|FL284149
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGT
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGT
EST: gi|7216575|gb|AW562697.1|AW562697
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|148954179|gb|EC899582.2|EC899582
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|149004243|gb|EE039011.2|EE039011
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|84908370|gb|DW404248.1|DW404248
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434059|gb|FL284152.1|FL284152
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGC
EST: gi|32916079|gb|CF020891.1|CF020891
EST:     GGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: GGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32798848|gb|CD951084.1|CD951084
EST:     TGAAAAAGACCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|61118809|gb|DN559770.1|DN559770
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211436661|gb|FL284170.1|FL284170
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32866276|gb|CF005958.1|CF005958
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32797411|gb|CD949647.1|CD949647
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434066|gb|FL284159.1|FL284159
EST:     GAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGC
genomic: GAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAG-CTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGC
EST: gi|149001189|gb|EE038457.2|EE038457
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|148981184|gb|EE027483.2|EE027483
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|113702815|gb|EE680319.1|EE680319
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTATGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434064|gb|FL284157.1|FL284157
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCCTCCGTG
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTC-TCCGTG
EST: gi|32788512|gb|CD940748.1|CD940748
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|32790289|gb|CD942525.1|CD942525
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGGGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
EST: gi|211434070|gb|FL284163.1|FL284163
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGA
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGA
EST: gi|149050302|gb|EE048574.2|EE048574
EST:     TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 343

TATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 218

TATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 152

TATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 352

TATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaaa ... ggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
                                   ttttttttttggct  CT-rich tract
                       taacgtttaacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttaaatccacttcatctgatgaactgtttgctgcctctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA