1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttagggtacaccaccttttaggctttgcaatgtgtttctaatgaacctgtgttcatgaatatttccacctctcatcgagtcattggacatcattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGAAAATCTCTGGCGCCAAAATGCCCTGAAGACTTTGCCTGTCCTGCTGAAC
species | Zea mays |
transcript | GRMZM2G136803_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32931864|gb|CF036676.1|CF036676
genomic: GAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32932809|gb|CF037621.1|CF037621
genomic: CG-TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|211541852|gb|FL147714.1|FL147714
genomic: TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATGTCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32837361|gb|CD977039.1|CD977039
genomic: CGTT-CAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32930164|gb|CF034976.1|CF034976
genomic: CG-TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32836690|gb|CD976368.1|CD976368
genomic: CG-TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGAEST: gi|32932023|gb|CF036835.1|CF036835
genomic: CG-TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
EST: CGTTTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAG CAAAAATATCCTCAGAAGATTGTATTATGACTATTATTTTGTTCGCCAAGA
genomic: CG-TTCAACCTGGAAGACACATCAAGTTTTAGGGACCTTGATGAACACAGgtaatgttag ... cattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGA
cctgtgttcatgaatatttccacctctcatcgagtcattggacatcattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGAAAATCTCTGGCGCCAAAATGCCCTGAAGACTTTGCCTGTCCTGCTGAAC
tcatttt CT-rich tract
atgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagggtacaccaccttttaggctttgcaatgtgtttctaatgaacctgtgttcatgaatatttccacctctcatcgagtcattggacatcattttacagCAAAAATATCCTCAGAAGATTGTATTATAACTATTATTTTGTTCGCCAAGAAAATCTCTGGCGCCAAAATGCCCTGAAGACTTTGCCTGTCCTGCTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA