1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atctgatctaaacttataacgccagtaaaatgtggtgaattgcgatggttgagttcattgtgtgggaatgaaatctaagtgattcccttttctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAACAAGCCCCGTTTTCAAAGGAATGTACTGAATTTTTCCTCACGACCCAT
species | Zea mays |
transcript | GRMZM2G136662_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|148961477|gb|EE012225.2|EE012225
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|211099247|gb|FL471143.1|FL471143
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACMCAAAGGAGGACTACGAGGAACATGGAGCCAGCATTTGCAGAEST: gi|74236604|gb|DT644518.1|DT644518
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|5932669|gb|AW057030.1|AW057030
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|6194835|gb|AW146939.1|AW146939
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|211470997|gb|FL473493.1|FL473493
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|211099248|gb|FL471144.1|FL471144
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|76918618|gb|DV167378.1|DV167378
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAEST: gi|166560225|gb|EG313005.1|EG313005
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGA
EST: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAG TTTTGCCACACAAAGGAGGACTACG
genomic: CGGTTTGGTTCGGGGGGTCACTAGCTGCATCTAACCCTGACTTCTTTGAGgtacctgcca ... tctcatgcagTTTTGCCACACAAAGGAGGACTACG
tggttgagttcattgtgtgggaatgaaatctaagtgattcccttttctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAACAAGCCCCGTTTTCAAAGGAATGTACTGAATTTTTCCTCACGACCCAT
ttcccttttctcatgc CT-rich tract
aatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgatctaaacttataacgccagtaaaatgtggtgaattgcgatggttgagttcattgtgtgggaatgaaatctaagtgattcccttttctcatgcagTTTTGCCACACAAAGGAGGACTACGAGGAACATGGAGCCAGCATCTGCAGAACAAGCCCCGTTTTCAAAGGAATGTACTGAATTTTTCCTCACGACCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - cagtaaaa
- - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - tgcgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgaaa