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...tggtgtgtgtgtgtgtgaggggggaggggggcatgcatttgtctctttatgaaaataggacatttttgttggtaataatggcatgacattttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACAATCTAGCCAAGCATCTACGTAGTGTTGACTCCCTTGTGGTAGCCAAAA
species | Zea mays |
transcript | GRMZM2G134889_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|32165106|gb|CD670424.1|CD670424
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTGCTTCTTGAG ATATATGCGCCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|149077066|gb|EE165722.2|EE165722
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|71767590|gb|DR965527.1|DR965527
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|110965155|gb|EE185055.1|EE185055
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|37392565|gb|CF633534.1|CF633534
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|211190973|gb|FL452316.1|FL452316
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: CAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|31909789|gb|CD651094.1|CD651094
genomic: CAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|148938717|gb|EC883049.2|EC883049
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|67020721|gb|CO449470.1|CO449470
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|37381267|gb|CF627509.1|CF627509
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: GAATCTGGATCTAATAG-TTTTGNATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|148974380|gb|EE025157.2|EE025157
genomic: GAATCTGGATCTAATAGTTTTTG-ATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|76285047|gb|DV024615.1|DV024615
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|67013918|gb|CO442667.1|CO442667
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|211193717|gb|FL465421.1|FL465421
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACEST: gi|78105578|gb|DV523996.1|DV523996
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
EST: AGAATCTGGATTTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAG ATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
genomic: AGAATCTGGATCTAATAGTTTTTGATGAAACAAAAGATGTACTTCTTGAGgtatgacatc ... ttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAAC
tttatgaaaataggacatttttgttggtaataatggcatgacattttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACAATCTAGCCAAGCATCTACGTAGTGTTGACTCCCTTGTGGTAGCCAAAA
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgtgtgtgtgtgtgaggggggaggggggcatgcatttgtctctttatgaaaataggacatttttgttggtaataatggcatgacattttggatgaagATATATGCACCATGGTGTGGTCATTGTCAATCGCTGGAACCTACTTACAACAATCTAGCCAAGCATCTACGTAGTGTTGACTCCCTTGTGGTAGCCAAAA
tggtgtg
- - - - - - - - - - - - - - -ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - gaaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgac