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...tttgatactcatacactgaagtgccactaaatgttctctcattgaaagaaacacatggtaacaacagaccaatgagcttatttgaacactaccgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCACTCTGGCACATAAGCTTTTTGGAGTTACTGTTGAACCTGCAGATGGGC
species | Zea mays |
transcript | GRMZM2G133919_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAT GAAGAGCTGCGCCCTTATTTTGGCACTACCCAAGGTTAEST: gi|67011759|gb|CO440508.1|CO440508
genomic: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAGgtttgctttt ... accgttgcagGAAGAGCTGCGCCCTTATTTTG-CACTACCCAAGGTTA
EST: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAG GAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCEST: gi|67026706|gb|CO455455.1|CO455455
genomic: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAGgtttgctttt ... accgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTC
EST: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAG GAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCEST: gi|211206209|gb|FL245888.1|FL245888
genomic: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAGgtttgctttt ... accgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTC
EST: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAG GAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCEST: gi|15554185|gb|BI644183.1|BI644183
genomic: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAGgtttgctttt ... accgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTC
EST: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAG GAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTC
genomic: TTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATATGATATCAATGAGgtttgctttt ... accgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTC
aagaaacacatggtaacaacagaccaatgagcttatttgaacactaccgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCACTCTGGCACATAAGCTTTTTGGAGTTACTGTTGAACCTGCAGATGGGC
tggtaac putative branch site (score: 112)
ttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatactcatacactgaagtgccactaaatgttctctcattgaaagaaacacatggtaacaacagaccaatgagcttatttgaacactaccgttgcagGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTCTTCACTCTGGCACATAAGCTTTTTGGAGTTACTGTTGAACCTGCAGATGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- tgatact
- - - - -catacac
- - - - - - - - - - - gccacta
- - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaga