1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gttagaatgtattccattttcttggagagcgtgttccattccagtaccttccgttgagtgtatcttattaatttctttcacacattagATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGACATAGATGAACTGGCAGCCCTACTGGCTGCTCAACAAGAAGA
species | Zea mays |
transcript | GRMZM2G133885_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTCTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAG ATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGACEST: gi|6194530|gb|AW146634.1|AW146634
genomic: AATTCTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAGgttagaatgt ... cacacattagATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGAC
EST: AATTCTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAG ATTGAAGAGCTTTTCCGTCAAGCTATTATACAAATAGTGATGGCATAGTTGEST: gi|71440590|gb|DR821640.1|DR821640
genomic: AATTCTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAGgttagaatgt ... cacacattagATTGAAGAGCTTTTCCGTCAAGC-A-GATACAAATAGTGATGGCATAGTTG
EST: CTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAG ATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGAC
genomic: CTCAGACTTGATGAAAGCTTTTGGTAATAAATTAGCAGTTGCAAAGgttagaatgt ... cacacattagATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGAC
ttccattccagtaccttccgttgagtgtatcttattaatttctttcacacattagATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGACATAGATGAACTGGCAGCCCTACTGGCTGCTCAACAAGAAGA
tattaat putative branch site (score: 94)
tttctttcac CT-rich tract
tatcttattaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaatgtattccattttcttggagagcgtgttccattccagtaccttccgttgagtgtatcttattaatttctttcacacattagATTGAAGAGCTTTTCCGTCAAGCAGATACAAATAGTGATGGCATAGTTGACATAGATGAACTGGCAGCCCTACTGGCTGCTCAACAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG