1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgagcatgttaatttcatttttgacattttgccatggtttagacaattaaccagtcacgtgggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTCCGATATATGACTCTGTTCGAAGAATGAGGAAGAGATAGCGAGCCTTGT
species | Zea mays |
transcript | GRMZM2G133359_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|211047570|gb|FL477580.1|FL477580
genomic: TGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCCGGAAAGCTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCMCCATTCTGTTCCGTEST: gi|32909844|gb|CF014656.1|CF014656
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|84977316|gb|DW475738.1|DW475738
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: GACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|32909943|gb|CF014755.1|CF014755
genomic: GACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|16925875|gb|BM078943.1|BM078943
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|88748683|gb|DY532824.1|DY532824
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTEST: gi|211232786|gb|FL437702.1|FL437702
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
EST: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCG GTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
genomic: CTGCTATCAATGTTGGCAAAAGACCTGAAAATGCTGGAAAGTTGATTGCGgtgcgagcat ... gggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGT
catttttgacattttgccatggtttagacaattaaccagtcacgtgggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTCCGATATATGACTCTGTTCGAAGAATGAGGAAGAGATAGCGAGCCTTGT
aattaac putative branch site (score: 2)
acaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgagcatgttaatttcatttttgacattttgccatggtttagacaattaaccagtcacgtgggtttgcagGTCATTTTCCCCAGCTTTGGAGAGAGATACATCTCCACCATTCTGTTCCGTCCGATATATGACTCTGTTCGAAGAATGAGGAAGAGATAGCGAGCCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA