1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcagatgatctttttttcttctcttttacattgctcagctcttgttctctgaattctgatcctgtgcaatgtaaagcctaacctgtgtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCACCACATGAACGACCTCCGGGTGGCCCTGAGCGCGCAGATCGGCGACGA
species | Zea mays |
transcript | GRMZM2G133331_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|71448696|gb|DR829746.1|DR829746
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGNAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|74237892|gb|DT645806.1|DT645806
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|93017001|gb|EB642521.1|EB642521
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGNAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|71773720|gb|DR971616.1|DR971616
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|76923172|gb|DV169368.1|DV169368
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGNAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|71330993|gb|DR802318.1|DR802318
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGNAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|91868422|gb|EB400029.1|EB400029
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCEST: gi|91871984|gb|EB401941.1|EB401941
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
EST: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAG GTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
genomic: GATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGgcagatgatc ... gtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGC
ttgttctctgaattctgatcctgtgcaatgtaaagcctaacctgtgtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCACCACATGAACGACCTCCGGGTGGCCCTGAGCGCGCAGATCGGCGACGA
gcctaac putative branch site (score: 2)
tgtcctt putative PPT
aatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagatgatctttttttcttctcttttacattgctcagctcttgttctctgaattctgatcctgtgcaatgtaaagcctaacctgtgtccttgcagGTGCGTTGGCGTTCGACCTGGAGTACGCGCGGTGGCTGGACGAGCACCAGCACCACATGAACGACCTCCGGGTGGCCCTGAGCGCGCAGATCGGCGACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT