Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatcttgagtcttatttttttttcagttcactatgaagatcgattgtgtattctctattcttgtatctaacctgagatgtgtttacctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT

Basic information

species Zea mays
transcript GRMZM2G133213_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 3'ss of exon 8
gtgaatcttgagtcttatttttt-----tttcagttcactatgaagatc---gattgtgtat----tctctattcttgtatcta-acctgagatgtgtttacctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT
|| || ||  | ||||  ||||       |   ||| |  | |||| |      || |||||    |||| |       |  || |  | | |||||||||  | || |||||| |||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||   ||||| ||||||||||||||||||||||||||  |  
gtaaaactcaaatcttcattttcggaacctcttgtttagaaagaagtttttgctttctgtatggtgtctcaacctggacacttacatataatatgtgtttaattgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTGATGAGCTCGGGTACACCAAGGAGATGCAGTTCCAGTTCTAAGCTCTCC

upper sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA19G29720.1 (Glycine max), 3'ss of exon 8
--------gtgaatcttgagtcttatttttttttcagttcactatgaagatcgattgtg-tattctctattcttg-------tatctaacctgagatgtgtttaccta--tttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT
         | | | || |  |  |||  |     | |    ||||| | |   || || || |    ||            ||  | |  |||    | | |  |    ||||||||  |||||||||| || || || |||||||||||||||||||| |||||||| |  ||    ||  |    ||||||||||||||||||| |      |
gtaattgtttcattatttaaccccattactccaaaattatgttatgatgttttcttttgctagttgtcatgtaaaaggaagataaatgatttgacgcatttcttgcggattttcagATATTGAGATGTGGCCCCCCACCTATGAACAAGGCCATGGCTGCTCACCTTGAAGCCCTTGGATATGCTCCTGAGATGCAGTTCCAGTTCTGATTCTCTT

upper sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA03G00920.1 (Glycine max), 3'ss of exon 8
gtgaatcttgagtcttatttttttttcagttcactatgaagatcgattgtgtattctctattcttgtatctaacc-----------tgagatgtgtttaccta----tttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT
|| | | ||   |  | ||      | | | ||  || | |||  ||| | | ||    ||  ||| ||  ||             | ||| ||||||         ||||||||  |||||||||| || || || ||||||||||||||||||||||||||||| |  ||    ||  |    ||||||||||||||||||| |      |
gtaattgtttcattat-ttaacccattactccaaaattatgat--attttcttttgctaatcattgcataaaaggaagataaatgattagacgtgtttcttgcggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTGAAGCCCTTGGATATGCTTCTGAGATGCAGTTCCAGTTCTGATTCTCTT

upper sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G17770.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgaatcttgagtcttattttttttt-cagttcactatgaagatcgattgtgtattctctattcttgtatctaacctgagatgtgtttacct----atttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT
 || |    || | | |  ||  |   || |||| | |       ||   | |  | |    |  ||| ||  | || ||    ||| |  |    ||| |||||||| ||||| || || || || ||||||||||||||||||||| ||||||| |  ||    ||| |   ||||||||| |||||||||| | |    |
-tgcaaga-gaatgtaacattgataaacaattcatttttggtgaggagcatatggtttaagatggtgtgtc-gatctaagtatggttcatgtttaaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGATACTCTCCGGAGATGCAATTCCAGTTCTGATCTGAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149102560|gb|EE287919.2|EE287919
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACA-GGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|76925297|gb|DV170368.1|DV170368
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|33094787|gb|CF054781.1|CF054781
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCCGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|78021300|gb|DV489687.1|DV489687
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32847392|gb|CD987073.1|CD987073
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|50324317|gb|CO519443.1|CO519443
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32939915|gb|CF044734.1|CF044734
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGTTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|211135584|gb|FL028678.1|FL028678
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGSCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTMSTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|71762916|gb|DR960853.1|DR960853
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32931398|gb|CF036210.1|CF036210
EST:     TAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: TAAGGAAATGATCCAATCTCATTGTCCAGCGCCTG-CTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32847563|gb|CD987244.1|CD987244
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|87152328|gb|DY397117.1|DY397117
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|76012143|gb|DT939313.1|DT939313
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|149082026|gb|EE171198.2|EE171198
EST:     TAAAGGAA-TGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGG
genomic: TAA-GGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGG
EST: gi|32837232|gb|CD976910.1|CD976910
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|110942132|gb|EE162289.1|EE162289
EST:     TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32858270|gb|CD997951.1|CD997951
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|110222928|gb|EC904826.1|EC904826
EST:     TTAAGGAAATGATCCAATTTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|5871734|gb|AW018205.1|AW018205
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|76291173|gb|DV030741.1|DV030741
EST:     TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|60353457|gb|DN220430.1|DN220430
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|71767235|gb|DR965172.1|DR965172
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|60353485|gb|DN220458.1|DN220458
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|78080766|gb|DV509178.1|DV509178
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGAT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGAT
EST: gi|149080052|gb|EE169070.2|EE169070
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32926907|gb|CF031719.1|CF031719
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCACCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|19058065|gb|BM736732.1|BM736732
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32836716|gb|CD976394.1|CD976394
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|111189782|gb|EE287918.1|EE287918
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|93017179|gb|EB642699.1|EB642699
EST:     TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|110941247|gb|EE161404.1|EE161404
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|10191564|gb|BE761640.1|BE761640
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32847795|gb|CD987476.1|CD987476
EST:     CTAAAGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|93014585|gb|EB640105.1|EB640105
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|50328081|gb|CO523207.1|CO523207
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|149037730|gb|EE155392.2|EE155392
EST:     TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32930913|gb|CF035725.1|CF035725
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTTCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32837750|gb|CD977428.1|CD977428
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|33093863|gb|CF053857.1|CF053857
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|93014408|gb|EB639928.1|EB639928
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32926813|gb|CF031625.1|CF031625
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCACCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32941942|gb|CF046761.1|CF046761
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|149080051|gb|EE169069.2|EE169069
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32925558|gb|CF030370.1|CF030370
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|78080765|gb|DV509177.1|DV509177
EST:     TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|78109073|gb|DV527490.1|DV527490
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|60357354|gb|DN224327.1|DN224327
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|113702377|gb|EE679881.1|EE679881
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|60397090|gb|DN229909.1|DN229909
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: gi|32926814|gb|CF031626.1|CF031626
EST:     CTAAGGAAATGATCCAATCTCATTGTCCAGCACCTGCTGAGGACATTCAG                         ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 349

CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 568

CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 620

CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 492

CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgattgtgtattctctattcttgtatctaacctgagatgtgtttacctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT
                        atctaac  putative branch site (score: 492)
                                             cctatttc  putative PPT
               tattctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaatcttgagtcttatttttttttcagttcactatgaagatcgattgtgtattctctattcttgtatctaacctgagatgtgtttacctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTGACGAGCTCAACTACACAAAGGAGATGCAGTTCCAGTTCTAAGCAATGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA