1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagacaactgatgatcccgcataaatcttgtagcttgatttacctcccaccctgaaaactcaaatgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAACGACATCATGGAGTTTGAAAAGATCCTGAAG
species | Zea mays |
transcript | GRMZM2G132804_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|29945633|gb|CB815739.1|CB815739
genomic: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaac ... atgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|60401353|gb|DN234160.1|DN234160
genomic: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaac ... atgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|32164838|gb|CD670156.1|CD670156
genomic: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaac ... atgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
genomic: ATGTTGATGGAGTCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaac ... atgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
gcataaatcttgtagcttgatttacctcccaccctgaaaactcaaatgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAACGACATCATGGAGTTTGAAAAGATCCTGAAG
gcttgat putative branch site (score: 67)
ttgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaactgatgatcccgcataaatcttgtagcttgatttacctcccaccctgaaaactcaaatgcttgcagGTACAAGAACGATAGTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAACGACATCATGGAGTTTGAAAAGATCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG