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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaacataatttactggctaaccatttcgtagaaaagatccattttcccctgatgttggtgctgctggcttatcatttcatttgttcatatttccttcagGTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076716|gb|DV505150.1|DV505150
EST:     AATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG                         GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCAT
genomic: AATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTGgtatgcacca ... tttccttcagGTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCAT
EST: gi|211111684|gb|FL466622.1|FL466622
EST:     AATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG                         GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCAT
genomic: AATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTGgtatgcacca ... tttccttcagGTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccctgatgttggtgctgctggcttatcatttcatttgttcatatttccttcagGTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG
  ccctgat  putative branch site (score: 4)
                                       ttcatatttccttc  putative PPT
                        ttatcatttcattt  TA-rich tract