1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaatccatgcttctgtctgtccactgaaaatgtctgtattccgtagttcgaatctatgcaatcagtttattttcatgatttttatttgtttttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAGTGAAATTTCTTCATGAGTGTCGACTGCTGCATGAGCGTCTACTGGAAT
species | Zea mays |
transcript | GRMZM2G131070_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAG AGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAEST: gi|211302442|gb|FL244048.1|FL244048
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAGgtatagtggt ... tttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAG AGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAEST: gi|74240813|gb|DT648727.1|DT648727
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAGgtatagtggt ... tttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAG AGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAEST: gi|211302444|gb|FL244050.1|FL244050
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAGgtatagtggt ... tttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAG AGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGA
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAACAGAAGACTGGTTTAGAGgtatagtggt ... tttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGA
gttcgaatctatgcaatcagtttattttcatgatttttatttgtttttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAGTGAAATTTCTTCATGAGTGTCGACTGCTGCATGAGCGTCTACTGGAAT
tttttatttgttttt CT-rich tract
aatcagtttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatccatgcttctgtctgtccactgaaaatgtctgtattccgtagttcgaatctatgcaatcagtttattttcatgatttttatttgtttttgtttcagAGAGTTATTATTAGAGATAAACAGAGGTCAGCACGTGCAAAGTTATGCCGAGTGAAATTTCTTCATGAGTGTCGACTGCTGCATGAGCGTCTACTGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC