Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaattctcatctggattttcttggttctgtgcgaacttattttaatcttattacagatggatgattctgaacccaactttttgaacgctttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT

Basic information

species Zea mays
transcript GRMZM2G130398_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 3'ss of exon 8
ttaaattctcatctggatttt---cttggttctgtgcgaacttattttaatcttattacagatggatgattctgaacccaactttttgaacgctttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT
 ||  | ||  |  | ||       | | || ||     | ||     |   |  | |     | ||  ||||||  |||||||||  || ||| || | |||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || |||||||||||
-tagctactgttgagcatccaacattagcttttgcttcgatttgcaccatcttggtcatca--gaatagttctgattccaacttttcaaatgctgtctttcagTGAAATAGAGAAGTTGAAGCTTTCCGAGCTTACCTGCCGGGAAGGCATTGTGGAGGTTGCAAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983025|gb|EE028929.2|EE028929
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32933855|gb|CF038667.1|CF038667
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|12972091|gb|BG267809.1|BG267809
EST:     TTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: TTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60338881|gb|DN205854.1|DN205854
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927605|gb|CF032417.1|CF032417
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149009038|gb|EE153768.2|EE153768
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|211349513|gb|FL214799.1|FL214799
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32832322|gb|CD972000.1|CD972000
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGG
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149008297|gb|EE040446.2|EE040446
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTCCCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|8103349|gb|AW927991.1|AW927991
EST:     AAATACTTCGGTGCTGCATTGGGNAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78081015|gb|DV509427.1|DV509427
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32836004|gb|CD975682.1|CD975682
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|76280504|gb|DV020072.1|DV020072
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32838687|gb|CD978368.1|CD978368
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60396390|gb|DN229259.1|DN229259
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149106946|gb|EE188847.2|EE188847
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32908217|gb|CF013030.1|CF013030
EST:     GCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: GCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60345448|gb|DN212421.1|DN212421
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927665|gb|CF032477.1|CF032477
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|71771504|gb|DR969441.1|DR969441
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|76913938|gb|DV165334.1|DV165334
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTT
EST: gi|29545051|gb|CB605229.1|CB605229
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60397420|gb|DN230236.1|DN230236
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|5847108|gb|AW000187.1|AW000187
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927594|gb|CF032406.1|CF032406
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78120695|gb|DV539079.1|DV539079
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|71449735|gb|DR830785.1|DR830785
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|148949400|gb|EC894857.2|EC894857
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|5108169|gb|AI739882.1|AI739882
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|37375788|gb|CF624359.1|CF624359
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927949|gb|CF032761.1|CF032761
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|211023757|gb|FL452141.1|FL452141
EST:     GCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: GCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|71771503|gb|DR969440.1|DR969440
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|94480176|gb|EB709134.1|EB709134
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|113703248|gb|EE680752.1|EE680752
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927994|gb|CF032806.1|CF032806
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGCCTGCAAAGAC                         TGAGATAGAAAAGTTGAACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32908216|gb|CF013029.1|CF013029
EST:     GCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: GCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149044660|gb|EE047634.2|EE047634
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60342548|gb|DN209521.1|DN209521
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78026023|gb|DV494410.1|DV494410
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGGAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|71449736|gb|DR830786.1|DR830786
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|110524744|gb|EE028928.1|EE028928
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927715|gb|CF032527.1|CF032527
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32834256|gb|CD973934.1|CD973934
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|111191295|gb|EE289431.1|EE289431
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|78120696|gb|DV539080.1|DV539080
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60347522|gb|DN214495.1|DN214495
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927914|gb|CF032726.1|CF032726
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927593|gb|CF032405.1|CF032405
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACGGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|32927584|gb|CF032396.1|CF032396
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60351410|gb|DN218383.1|DN218383
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|76289821|gb|DV029389.1|DV029389
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|148945159|gb|EC890359.2|EC890359
EST:     AAATACTTCGGTGCTCCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
EST: gi|60349038|gb|DN216011.1|DN216011
EST:     AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGAC                         TGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT
genomic: AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 555

AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 416

AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 596

AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 366

AAATACTTCGGTGCTGCATTGGGGAAGGGAAGACAGGCTGCAAAGACgtaagcttac ... tttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttattacagatggatgattctgaacccaactttttgaacgctttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT
 ttttaat  putative branch site (score: 366)
                                          cgctttc  putative PPT
                               aacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaaattctcatctggattttcttggttctgtgcgaacttattttaatcttattacagatggatgattctgaacccaactttttgaacgctttcatgcagTGAGATAGAAAAGTTGAAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG