1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtctttcttgccttttgtgtttgcttttttggcatttcactcatatttactacagtctatagtttgtgttataccttgatcttttatttttttaatcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGGATGACAATCATGTTTACATGACTGGTCCTGCAGAGGCCGTCTTTTATG
species | Zea mays |
transcript | GRMZM2G130332_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGCAGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG AAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGEST: gi|211026296|gb|FL344450.1|FL344450
genomic: CTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGGgtttgtcttt ... atcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
EST: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG AAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGEST: gi|24773782|gb|CA409036.1|CA409036
genomic: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGGgtttgtcttt ... atcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
EST: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG AAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGEST: gi|32832613|gb|CD972291.1|CD972291
genomic: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGGgtttgtcttt ... atcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
EST: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG AAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGEST: gi|211454587|gb|FL410345.1|FL410345
genomic: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGGgtttgtcttt ... atcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
EST: GTGCTTGTGCAGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGG AAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
genomic: GTGCTTGTGCGGTGGTTGTTGCAGCTGTTCTTGAGGGTCGAGCTGAGCGGgtttgtcttt ... atcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAG
ctacagtctatagtttgtgttataccttgatcttttatttttttaatcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGGATGACAATCATGTTTACATGACTGGTCCTGCAGAGGCCGTCTTTTATG
ttttaat putative branch site (score: 3)
ttataccttgatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctttcttgccttttgtgtttgcttttttggcatttcactcatatttactacagtctatagtttgtgttataccttgatcttttatttttttaatcataacagAAATGTGTAGTTGATTTGCCTGGCGGGCCATTGGAAATTGAGTGGAGGGAGGATGACAATCATGTTTACATGACTGGTCCTGCAGAGGCCGTCTTTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG