1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcacgattcatgcacttttacacaccccatgagaacgtttgattttgtcttttgatattttcttctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTGATGCCACTAAAATGTCAAGATTATATAGATGA
species | Zea mays |
transcript | GRMZM2G129268_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGAAAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|5296256|gb|AI782936.1|AI782936
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAACGEST: gi|32834213|gb|CD973891.1|CD973891
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: AAAGATATGACTGATA GTCCTGGAAAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|32832507|gb|CD972185.1|CD972185
genomic: AAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGAAAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|32833802|gb|CD973480.1|CD973480
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGAAAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|78093188|gb|DV521562.1|DV521562
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: AAGACAAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|60355925|gb|DN222898.1|DN222898
genomic: AAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|60355918|gb|DN222891.1|DN222891
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|32835880|gb|CD975558.1|CD975558
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGAAAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGEST: gi|5762112|gb|AI967160.1|AI967160
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: AAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAACGEST: gi|5846795|gb|AI999878.1|AI999878
genomic: AAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATA GTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAACG
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGATAgtatgtcacg ... tctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATG
tacacaccccatgagaacgtttgattttgtcttttgatattttcttctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTGATGCCACTAAAATGTCAAGATTATATAGATGA
ttttgat putative branch site (score: 64)
tattttcttctc CT-rich tract
ttttgatattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcacgattcatgcacttttacacaccccatgagaacgtttgattttgtcttttgatattttcttctcaaacagGTCCTGGACAATCTTTGTTGACACGACGGCCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTGATGCCACTAAAATGTCAAGATTATATAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG