Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG

Basic information

species Zea mays
transcript GRMZM2G128995_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaact-----------attactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
      ||| || |||| | |||||||||    |  | ||||  |  || ||| |     |||  |||| || |  | |  ||||| |           | || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
------ttgttg-ggttttgtggtttgct----ttttctttgattcattcctcgtgaacttgtgttttcatggtgctcagttgtaattgcttacataaaactattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATTCTTAGATATGGTCTTCCCCCATCATTCCTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G05470.1 (Glycine max), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaact----attactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
  |||  |   |   || |     ||  |    |  ||||  |    ||| ||  ||  |      ||||||||    |  | | |||    |||  |  | |||| |||||||||||||||||||| |||||||||||| | ||||  |||||||| || ||||||||||| || ||||| ||| ||
-atttacta--gcatttgttgaccttaattttatacttttctcaccttttatcactca-acacttattcttgctcactactttttactttatattttttcaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttct---ttctctttcgtatgtcatttcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
    ||||      ||| | || | |  |  | | |   |    |  |   | || |  |   | | |||| ||  || |  |||     | ||    |  |||| ||||| |||||||||||||| ||||| |||||||| |||   |||||||| || ||||||||||| || ||||| ||| ||
aaaatgttaaca-agttctgtgatctcttctgcttgccctgttatcataaatgctgtgactcttctgatttgttattttt--acttctttttttttcctgaagGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcg-tatgtcatttcttgcttgtgaactgtaactattactg--tacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
          ||||  ||  |  | || |   |||   ||  |||  | ||      | | || |  ||||   |||| |  | |   | ||  |   |  |||| ||||| |||||||||||||| ||||| |||||||| |||   |||||||| || ||||||||||| || ||||| ||| ||
---cataaaatgtgaataagttctgtgatctcttgtgcttgccctgttatcgtaaatgctgtgactcttctgatttgttattttttcttttttttccctgaagGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaact----attactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
    | ||   | | || |||   |  |    |   || ||| ||| ||   ||    |       | |||  |    |  | | |||    |||  |  | |||| |||||||||||||||||||| |||||||||||| | ||||  |||||||| || ||||||||||| |||||||| ||| ||
--acttttctcgcgtttttatcactcaccacat--attcttgtcttgttatcctaaaatgctatggtccttattcactactttttactttatatttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT1G12840.1 (Arabidopsis thaliana), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
     || |  ||   || |   |   |||| | | | ||  | |    |    | | |   ||  || |    |  |  ||  | || |        |||| ||||| ||||||||||| |||||||||||||||   || |  ||||||||  | ||||| ||| | |||||  | ||| ||
-----gtag--gtatctacacattgctctgaatagatattctcttgtaatacaatacctgaatctgttttgatcttcggtctacatctgt--------agGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTG

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcattt---cttgcttgtgaactgtaacta---ttactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
       | || |  ||   |  | |    || ||||| |    || ||  |  | |   |||   ||   |||| ||    ||| ||| |    || |||  ||||| ||||| |||||||||||||| |||||||| |||||||||| ||||||||| || ||||||||  | || ||||| ||| | 
-----actactctt-ttcccttttctctcaagctggttctctaatttttgttagtgcacttgtttcttaaacttggtttgtgactctaaatgcattttctgagcagGTCTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTCTGAGATATGGATTGCCACCATCTTTCTTA

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 8
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatt--tcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
  |   |  ||   ||| | || |    || |    || |||  | ||| |  | |   || |   |  | ||  || |  |   | | | ||    | ||||| ||||| ||||||||||| || |||||||| |||||||||| |||||| ||||||||||||||  | || ||||| ||| ||
tgtgaatgacttgtgttgt-tgatagagtgtggctattgttgtttccttccaatgttaaattttggtaattttatttttatatcatgagt-ttctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67019107|gb|CO447856.1|CO447856
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|148963814|gb|EE014911.2|EE014911
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|32907249|gb|CF012062.1|CF012062
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|40334835|gb|CK368905.1|CK368905
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|60338283|gb|DN205256.1|DN205256
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|37401333|gb|CF638029.1|CF638029
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|37377800|gb|CF625543.1|CF625543
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTTTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|33095927|gb|CF055921.1|CF055921
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTACGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|32910284|gb|CF015096.1|CF015096
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|60354564|gb|DN221537.1|DN221537
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGGTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|12972189|gb|BG267858.1|BG267858
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|211151579|gb|FL387831.1|FL387831
EST:     CAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: CAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|60358961|gb|DN225934.1|DN225934
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|24763202|gb|CA398382.1|CA398382
EST:     CTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: CTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|149000733|gb|EE037951.2|EE037951
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|211040893|gb|FL451654.1|FL451654
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|149098810|gb|EE184821.2|EE184821
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|148968977|gb|EE019671.2|EE019671
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|110964923|gb|EE184823.1|EE184823
EST:     CCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGGTGTTTTTGTAGAGAG
genomic: CCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGC-GTGTCTTTGTAGAGAG
EST: gi|40303110|gb|CK347497.1|CK347497
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|149000703|gb|EE037917.2|EE037917
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|148954148|gb|EC899547.2|EC899547
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|67017448|gb|CO446197.1|CO446197
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|32907248|gb|CF012061.1|CF012061
EST:     TCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: TCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|14245311|gb|BG873893.1|BG873893
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|78076481|gb|DV504915.1|DV504915
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|211201056|gb|FL359983.1|FL359983
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|67013699|gb|CO442448.1|CO442448
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|37378328|gb|CF625849.1|CF625849
EST:     AAGCCATGAGGACTACACTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: gi|71427969|gb|DR809019.1|DR809019
EST:     AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAG                         GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCCATGAGGACCACTCTTCTTCAATGGTGCTATGCCAGCTACAGCGAGgtacttgtct ... tactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctctttcgtatgtcatttcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG
                                   ctgtaac  putative branch site (score: 3)
                                      taactatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctttgttgctgtggttatatggtttgctgagttggtttttgccttctttctctttcgtatgtcatttcttgcttgtgaactgtaactattactgtacagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA