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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtcattgtcttccaaccaaatattttattcctgttatttggcaattagctctggtagatttgtgctgtcctattgaataattgctaagtttttgctgcggaccttagctgctattgtctccagagaattttaaaaataaaactaactgtcattttctgttcagCTTCTATGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 8
gtaatgtcattgtcttccaaccaaatattttattcctgttatttggcaattagctctggtagatttgtgctgtcctattgaataattgctaagtttt-tgctgcggaccttagctgctattgtctccagagaattttaaaaataaaactaactgtcattttctgttcagCTTCTATGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG
                                                                      ||  |||||| ||  ||  ||| |||| || |||  ||| ||  |  || ||  |  |||    || ||||||  | ||||||  |||||   |||||||||||| || || ||||||||||| ||| |||||||||||||||||||||||||||| || |||||
-------------------------------------------------------------------acttgctctattggattgttcataaattttctgttgcataccctaatt-ttagtgagtgtagaatgattgaaaaatggagctaacta-catttgtggttcagCTTCTACGAGTACTTGCTCAAGGTTTGGGTCCAGGGGAATAAAACTGAGCATGTAAAGCATTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctattgtctccagagaattttaaaaataaaactaactgtcattttctgttcagCTTCTATGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG
                               aactaac  putative branch site (score: 1)
                                           ttttctgttc  putative PPT
                 aattttaaaaataaaa  TA-rich tract